| Chain sequence(s) |
H: EVQLVESGGGLVQPGRSLRLSCAASGFTFSSYAMNWVRRTPGKGLDWVSTISGIGKNTYYADSVKGRFTISRDNSKNTLYLQMNSLRADDTAVYYCAKTTFPGIVGEVDAFDIWGHGTMVTVSS
L: QSVLTQPPSVSVAPGKTATITCGGNNIGSKSVHWYQQKPGQAPVMVIYYDTDRPSGIPERFSGSNSGNTATLTISRVEAGDEADYYCQAWDSHIDHFVFGAGTKVTVL input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:56)
[INFO] Main: Simulation completed successfully. (00:00:57)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -1.7723 | |
| 2 | V | H | -0.6154 | |
| 3 | Q | H | -0.6999 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.3736 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.3988 | |
| 8 | G | H | -0.6543 | |
| 9 | G | H | -0.0776 | |
| 11 | G | H | 0.5308 | |
| 12 | L | H | 1.2591 | |
| 13 | V | H | -0.3846 | |
| 14 | Q | H | -1.7536 | |
| 15 | P | H | -2.0052 | |
| 16 | G | H | -2.1471 | |
| 17 | R | H | -2.7265 | |
| 18 | S | H | -1.6555 | |
| 19 | L | H | -0.8329 | |
| 20 | R | H | -1.0818 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.2894 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.2714 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.7465 | |
| 27 | G | H | -0.8590 | |
| 28 | F | H | -0.2803 | |
| 29 | T | H | -0.1613 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.3187 | |
| 36 | S | H | 0.3651 | |
| 37 | Y | H | 0.7310 | |
| 38 | A | H | 0.3308 | |
| 39 | M | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | R | H | -0.8820 | |
| 45 | T | H | -1.2661 | |
| 46 | P | H | -1.2623 | |
| 47 | G | H | -1.4760 | |
| 48 | K | H | -2.1898 | |
| 49 | G | H | -1.2956 | |
| 50 | L | H | 0.0000 | |
| 51 | D | H | -0.8072 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | S | H | 0.0000 | |
| 55 | T | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -0.0756 | |
| 58 | G | H | 0.3791 | |
| 59 | I | H | 1.1518 | |
| 62 | G | H | -0.3595 | |
| 63 | K | H | -1.3978 | |
| 64 | N | H | -0.9767 | |
| 65 | T | H | -0.6085 | |
| 66 | Y | H | -0.3556 | |
| 67 | Y | H | -0.7697 | |
| 68 | A | H | -1.2069 | |
| 69 | D | H | -2.3242 | |
| 70 | S | H | -1.6635 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.1630 | |
| 74 | G | H | -1.5252 | |
| 75 | R | H | -1.2952 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.5772 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.5089 | |
| 80 | R | H | -0.6395 | |
| 81 | D | H | -1.2624 | |
| 82 | N | H | -1.3994 | |
| 83 | S | H | -1.5736 | |
| 84 | K | H | -2.3529 | |
| 85 | N | H | -1.6681 | |
| 86 | T | H | -1.0228 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.2727 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.7192 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.5922 | |
| 93 | S | H | -1.7208 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.3271 | |
| 96 | A | H | -1.6067 | |
| 97 | D | H | -2.1811 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.5552 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.2683 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | T | H | 0.0000 | |
| 108 | T | H | 0.3893 | |
| 109 | F | H | 0.7495 | |
| 110 | P | H | 0.5986 | |
| 111 | G | H | 0.9276 | |
| 111A | I | H | 1.9720 | |
| 111B | V | H | 1.0501 | |
| 112B | G | H | -0.2434 | |
| 112A | E | H | -1.2628 | |
| 112 | V | H | -0.0471 | |
| 113 | D | H | 0.0000 | |
| 114 | A | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.0442 | |
| 117 | I | H | 0.2566 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | H | H | -1.1110 | |
| 121 | G | H | -0.4798 | |
| 122 | T | H | -0.0031 | |
| 123 | M | H | 0.5246 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.1232 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6328 | |
| 128 | S | H | -0.6494 | |
| 1 | Q | L | -0.7870 | |
| 2 | S | L | -0.1014 | |
| 3 | V | L | 1.2016 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | 0.1887 | |
| 6 | Q | L | 0.0000 | |
| 7 | P | L | -0.3574 | |
| 8 | P | L | -0.5866 | |
| 9 | S | L | -0.6314 | |
| 11 | V | L | -0.1719 | |
| 12 | S | L | 0.2011 | |
| 13 | V | L | 0.0450 | |
| 14 | A | L | -0.2661 | |
| 15 | P | L | -1.2849 | |
| 16 | G | L | -2.3494 | |
| 17 | K | L | -2.6309 | |
| 18 | T | L | -1.6015 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.0644 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.1426 | |
| 23 | C | L | 0.0000 | |
| 24 | G | L | -0.8194 | |
| 25 | G | L | -1.2445 | |
| 26 | N | L | -2.2395 | |
| 27 | N | L | -2.8149 | |
| 28 | I | L | 0.0000 | |
| 29 | G | L | -1.9587 | |
| 36 | S | L | -1.4015 | |
| 37 | K | L | -0.9181 | |
| 38 | S | L | -0.2414 | |
| 39 | V | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -0.1047 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.3230 | |
| 46 | P | L | -1.2376 | |
| 47 | G | L | -1.4250 | |
| 48 | Q | L | -1.6866 | |
| 49 | A | L | -0.7266 | |
| 50 | P | L | 0.0000 | |
| 51 | V | L | 1.2941 | |
| 52 | M | L | 0.0000 | |
| 53 | V | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.3518 | |
| 56 | Y | L | -0.2252 | |
| 57 | D | L | -0.7871 | |
| 65 | T | L | -0.9136 | |
| 66 | D | L | -1.6791 | |
| 67 | R | L | -1.5396 | |
| 68 | P | L | -0.6545 | |
| 69 | S | L | -0.6668 | |
| 70 | G | L | -0.7644 | |
| 71 | I | L | -0.5755 | |
| 72 | P | L | -1.1286 | |
| 74 | E | L | -2.1245 | |
| 75 | R | L | 0.0000 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.9232 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.6577 | |
| 80 | N | L | -0.9973 | |
| 83 | S | L | -1.4173 | |
| 84 | G | L | -2.0803 | |
| 85 | N | L | -2.6510 | |
| 86 | T | L | -1.4679 | |
| 87 | A | L | 0.0000 | |
| 88 | T | L | -0.2881 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.2806 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.7541 | |
| 93 | R | L | -2.6046 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -2.4590 | |
| 96 | A | L | -0.9725 | |
| 97 | G | L | -1.2845 | |
| 98 | D | L | 0.0000 | |
| 99 | E | L | -1.2431 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -1.0569 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | A | L | 0.0000 | |
| 107 | W | L | -0.3679 | |
| 108 | D | L | 0.0000 | |
| 109 | S | L | -0.8872 | |
| 110 | H | L | -0.9945 | |
| 113 | I | L | -0.1467 | |
| 114 | D | L | -0.6317 | |
| 115 | H | L | -0.4525 | |
| 116 | F | L | 0.0000 | |
| 117 | V | L | 0.2916 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | A | L | -0.1883 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.1984 | |
| 124 | V | L | 0.0000 | |
| 125 | T | L | 0.0639 | |
| 126 | V | L | 0.1602 | |
| 127 | L | L | 1.4296 |