Project name: query_structure

Status: done

Started: 2026-03-17 00:44:24
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVNAYNMYWYRQAPGKEREWVAAIASSGSYTHYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGEWWKEYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:39)
Show buried residues

Minimal score value
-3.4099
Maximal score value
0.9214
Average score
-0.8217
Total score value
-98.6064

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3816
2 V A -0.6616
3 Q A -0.7679
4 L A 0.0000
5 V A 0.7815
6 E A 0.0000
7 S A -0.6740
8 G A -1.0708
9 G A -0.8583
10 G A -0.0957
11 L A 0.9214
12 V A 0.0000
13 Q A -1.3125
14 A A -1.4983
15 G A -1.4258
16 G A -1.0112
17 S A -1.4350
18 L A -1.1052
19 R A -2.3543
20 L A 0.0000
21 S A -0.5444
22 C A 0.0000
23 A A -0.2307
24 A A 0.0000
25 S A -0.6694
26 G A -0.9225
27 F A -0.5158
28 P A -1.0361
29 V A 0.0000
30 N A -1.6445
31 A A -0.7410
32 Y A -0.4033
33 N A -0.5314
34 M A 0.0000
35 Y A 0.0988
36 W A 0.0000
37 Y A -0.2701
38 R A -1.1722
39 Q A -2.0810
40 A A -2.0454
41 P A -1.4378
42 G A -1.9470
43 K A -3.3151
44 E A -3.4099
45 R A -2.4426
46 E A -1.6340
47 W A -0.4182
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 A A -0.2601
53 S A -0.6549
54 S A -0.4349
55 G A -0.5719
56 S A 0.2446
57 Y A 0.8165
58 T A 0.0023
59 H A -1.0422
60 Y A -1.3371
61 A A -1.5549
62 D A -2.5639
63 S A -1.7993
64 V A 0.0000
65 K A -2.7924
66 G A -1.8698
67 R A -1.7354
68 F A 0.0000
69 T A -1.2117
70 I A 0.0000
71 S A -0.6847
72 R A -1.4188
73 D A -2.1188
74 N A -2.5932
75 A A -1.8385
76 K A -2.4696
77 N A -2.0138
78 T A 0.0000
79 V A 0.0000
80 Y A 0.0000
81 L A 0.0000
82 Q A -1.7028
83 M A 0.0000
84 N A -1.9297
85 S A -1.3840
86 L A 0.0000
87 K A -2.4442
88 P A -1.9563
89 E A -2.3693
90 D A 0.0000
91 T A -1.0294
92 A A 0.0000
93 V A -0.6642
94 Y A 0.0000
95 Y A -0.1412
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -1.0527
100 D A -0.9918
101 Y A 0.0706
102 G A -0.4783
103 E A -0.9828
104 W A 0.4121
105 W A 0.3579
106 K A -1.6456
107 E A -2.1259
108 Y A -1.4405
109 D A -1.8851
110 Y A -0.6525
111 W A 0.0093
112 G A -0.0784
113 Q A -0.9557
114 G A 0.0000
115 T A 0.0000
116 Q A -1.2105
117 V A 0.0000
118 T A -0.3701
119 V A 0.0000
120 S A -0.7999
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Laboratory of Theory of Biopolymers 2018