| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVNAYNMYWYRQAPGKEREWVAAIASSGSYTHYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGEWWKEYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:38)
[INFO] Main: Simulation completed successfully. (00:01:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3816 | |
| 2 | V | A | -0.6616 | |
| 3 | Q | A | -0.7679 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.7815 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6740 | |
| 8 | G | A | -1.0708 | |
| 9 | G | A | -0.8583 | |
| 10 | G | A | -0.0957 | |
| 11 | L | A | 0.9214 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3125 | |
| 14 | A | A | -1.4983 | |
| 15 | G | A | -1.4258 | |
| 16 | G | A | -1.0112 | |
| 17 | S | A | -1.4350 | |
| 18 | L | A | -1.1052 | |
| 19 | R | A | -2.3543 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5444 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2307 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6694 | |
| 26 | G | A | -0.9225 | |
| 27 | F | A | -0.5158 | |
| 28 | P | A | -1.0361 | |
| 29 | V | A | 0.0000 | |
| 30 | N | A | -1.6445 | |
| 31 | A | A | -0.7410 | |
| 32 | Y | A | -0.4033 | |
| 33 | N | A | -0.5314 | |
| 34 | M | A | 0.0000 | |
| 35 | Y | A | 0.0988 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.2701 | |
| 38 | R | A | -1.1722 | |
| 39 | Q | A | -2.0810 | |
| 40 | A | A | -2.0454 | |
| 41 | P | A | -1.4378 | |
| 42 | G | A | -1.9470 | |
| 43 | K | A | -3.3151 | |
| 44 | E | A | -3.4099 | |
| 45 | R | A | -2.4426 | |
| 46 | E | A | -1.6340 | |
| 47 | W | A | -0.4182 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | A | A | -0.2601 | |
| 53 | S | A | -0.6549 | |
| 54 | S | A | -0.4349 | |
| 55 | G | A | -0.5719 | |
| 56 | S | A | 0.2446 | |
| 57 | Y | A | 0.8165 | |
| 58 | T | A | 0.0023 | |
| 59 | H | A | -1.0422 | |
| 60 | Y | A | -1.3371 | |
| 61 | A | A | -1.5549 | |
| 62 | D | A | -2.5639 | |
| 63 | S | A | -1.7993 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.7924 | |
| 66 | G | A | -1.8698 | |
| 67 | R | A | -1.7354 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.2117 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.6847 | |
| 72 | R | A | -1.4188 | |
| 73 | D | A | -2.1188 | |
| 74 | N | A | -2.5932 | |
| 75 | A | A | -1.8385 | |
| 76 | K | A | -2.4696 | |
| 77 | N | A | -2.0138 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.7028 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.9297 | |
| 85 | S | A | -1.3840 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.4442 | |
| 88 | P | A | -1.9563 | |
| 89 | E | A | -2.3693 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0294 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.6642 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.1412 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -1.0527 | |
| 100 | D | A | -0.9918 | |
| 101 | Y | A | 0.0706 | |
| 102 | G | A | -0.4783 | |
| 103 | E | A | -0.9828 | |
| 104 | W | A | 0.4121 | |
| 105 | W | A | 0.3579 | |
| 106 | K | A | -1.6456 | |
| 107 | E | A | -2.1259 | |
| 108 | Y | A | -1.4405 | |
| 109 | D | A | -1.8851 | |
| 110 | Y | A | -0.6525 | |
| 111 | W | A | 0.0093 | |
| 112 | G | A | -0.0784 | |
| 113 | Q | A | -0.9557 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.2105 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3701 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7999 |