Project name: SMT3 [mutate: IV45A, KR51A, AY87A, NG96A] [mutate: IV45A, IV45A, KR51A, AT87A, NG96A, NG96A]

Status: done

Started: 2024-06-16 16:50:48
Settings
Chain sequence(s) A: MGHHHHHHGSLQDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues KR51A,IV45A,NG96A,AT87A
Energy difference between WT (input) and mutated protein (by FoldX) -1.98639 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:42)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:32)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:08)
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:42)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:22)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:57)
Show buried residues

Minimal score value
-4.0701
Maximal score value
1.3085
Average score
-1.5965
Total score value
-172.4238

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.4552
2 G A -0.8175
3 H A -1.8341
4 H A -2.5449
5 H A -2.5973
6 H A -2.6801
7 H A -2.2829
8 H A -1.9033
9 G A -1.0129
10 S A -0.7149
11 L A -0.1245
12 Q A -2.1047
13 D A -3.0557
14 S A -2.5051
15 E A -2.2571
16 V A -1.3303
17 N A -2.2120
18 Q A -2.8069
19 E A -2.8449
20 A A -2.2065
21 K A -2.8019
22 P A -1.8067
23 E A -1.9394
24 V A -0.4220
25 K A -1.6659
26 P A -1.1476
27 E A -1.4743
28 V A -0.0997
29 K A -1.3447
30 P A -1.6132
31 E A -2.4556
32 T A -1.5906
33 H A -2.3927
34 I A 0.0000
35 N A -1.5546
36 L A 0.0000
37 K A -0.1641
38 V A 0.0000
39 S A -1.0701
40 D A -1.7889
41 G A -1.3791
42 S A -0.9609
43 S A -1.2416
44 E A -1.5040
45 V A 0.2984 mutated: IV45A
46 F A 1.3085
47 F A 0.0425
48 K A -1.7391
49 I A -1.4251
50 K A -1.9756
51 R A -2.8080 mutated: KR51A
52 T A -1.3302
53 T A -1.3874
54 P A -2.1520
55 L A 0.0000
56 R A -2.6898
57 R A -2.8153
58 L A 0.0000
59 M A 0.0000
60 E A -3.4870
61 A A -2.3775
62 F A 0.0000
63 A A 0.0000
64 K A -4.0701
65 R A -3.5197
66 Q A -2.4969
67 G A -2.9338
68 K A -3.6333
69 E A -3.7461
70 M A -3.2836
71 D A -2.9989
72 S A -2.4885
73 L A 0.0000
74 R A -2.8579
75 F A 0.0000
76 L A -1.1184
77 Y A -0.5782
78 D A -1.5305
79 G A -0.8796
80 I A 0.2022
81 R A -1.7307
82 I A 0.0000
83 Q A -2.3017
84 A A -2.5181
85 D A -2.9283
86 Q A -2.4343
87 T A -2.4307 mutated: AT87A
88 P A 0.0000
89 E A -3.6885
90 D A -3.3707
91 L A -2.2948
92 D A -3.3134
93 M A 0.0000
94 E A -3.4118
95 D A -2.8910
96 G A -1.3496 mutated: NG96A
97 D A -0.9180
98 I A 0.1164
99 I A 0.0000
100 E A -1.8915
101 A A 0.0000
102 H A -2.3473
103 R A -2.9427
104 E A -2.1859
105 Q A -1.4147
106 I A 0.5838
107 G A -0.0490
108 G A -0.4424
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Laboratory of Theory of Biopolymers 2018