Chain sequence(s) |
A: MGHHHHHHGSLQDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | KR51A,IV45A,NG96A,AT87A |
Energy difference between WT (input) and mutated protein (by FoldX) | -1.98639 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:01:42) [INFO] FoldX: Starting FoldX energy minimalization (00:02:32) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:07) [INFO] Main: Simulation completed successfully. (00:03:08) [INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:01:42) [INFO] FoldX: Starting FoldX energy minimalization (00:02:22) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:57) [INFO] Main: Simulation completed successfully. (00:02:57) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | M | A | 0.4552 | |
2 | G | A | -0.8175 | |
3 | H | A | -1.8341 | |
4 | H | A | -2.5449 | |
5 | H | A | -2.5973 | |
6 | H | A | -2.6801 | |
7 | H | A | -2.2829 | |
8 | H | A | -1.9033 | |
9 | G | A | -1.0129 | |
10 | S | A | -0.7149 | |
11 | L | A | -0.1245 | |
12 | Q | A | -2.1047 | |
13 | D | A | -3.0557 | |
14 | S | A | -2.5051 | |
15 | E | A | -2.2571 | |
16 | V | A | -1.3303 | |
17 | N | A | -2.2120 | |
18 | Q | A | -2.8069 | |
19 | E | A | -2.8449 | |
20 | A | A | -2.2065 | |
21 | K | A | -2.8019 | |
22 | P | A | -1.8067 | |
23 | E | A | -1.9394 | |
24 | V | A | -0.4220 | |
25 | K | A | -1.6659 | |
26 | P | A | -1.1476 | |
27 | E | A | -1.4743 | |
28 | V | A | -0.0997 | |
29 | K | A | -1.3447 | |
30 | P | A | -1.6132 | |
31 | E | A | -2.4556 | |
32 | T | A | -1.5906 | |
33 | H | A | -2.3927 | |
34 | I | A | 0.0000 | |
35 | N | A | -1.5546 | |
36 | L | A | 0.0000 | |
37 | K | A | -0.1641 | |
38 | V | A | 0.0000 | |
39 | S | A | -1.0701 | |
40 | D | A | -1.7889 | |
41 | G | A | -1.3791 | |
42 | S | A | -0.9609 | |
43 | S | A | -1.2416 | |
44 | E | A | -1.5040 | |
45 | V | A | 0.2984 | mutated: IV45A |
46 | F | A | 1.3085 | |
47 | F | A | 0.0425 | |
48 | K | A | -1.7391 | |
49 | I | A | -1.4251 | |
50 | K | A | -1.9756 | |
51 | R | A | -2.8080 | mutated: KR51A |
52 | T | A | -1.3302 | |
53 | T | A | -1.3874 | |
54 | P | A | -2.1520 | |
55 | L | A | 0.0000 | |
56 | R | A | -2.6898 | |
57 | R | A | -2.8153 | |
58 | L | A | 0.0000 | |
59 | M | A | 0.0000 | |
60 | E | A | -3.4870 | |
61 | A | A | -2.3775 | |
62 | F | A | 0.0000 | |
63 | A | A | 0.0000 | |
64 | K | A | -4.0701 | |
65 | R | A | -3.5197 | |
66 | Q | A | -2.4969 | |
67 | G | A | -2.9338 | |
68 | K | A | -3.6333 | |
69 | E | A | -3.7461 | |
70 | M | A | -3.2836 | |
71 | D | A | -2.9989 | |
72 | S | A | -2.4885 | |
73 | L | A | 0.0000 | |
74 | R | A | -2.8579 | |
75 | F | A | 0.0000 | |
76 | L | A | -1.1184 | |
77 | Y | A | -0.5782 | |
78 | D | A | -1.5305 | |
79 | G | A | -0.8796 | |
80 | I | A | 0.2022 | |
81 | R | A | -1.7307 | |
82 | I | A | 0.0000 | |
83 | Q | A | -2.3017 | |
84 | A | A | -2.5181 | |
85 | D | A | -2.9283 | |
86 | Q | A | -2.4343 | |
87 | T | A | -2.4307 | mutated: AT87A |
88 | P | A | 0.0000 | |
89 | E | A | -3.6885 | |
90 | D | A | -3.3707 | |
91 | L | A | -2.2948 | |
92 | D | A | -3.3134 | |
93 | M | A | 0.0000 | |
94 | E | A | -3.4118 | |
95 | D | A | -2.8910 | |
96 | G | A | -1.3496 | mutated: NG96A |
97 | D | A | -0.9180 | |
98 | I | A | 0.1164 | |
99 | I | A | 0.0000 | |
100 | E | A | -1.8915 | |
101 | A | A | 0.0000 | |
102 | H | A | -2.3473 | |
103 | R | A | -2.9427 | |
104 | E | A | -2.1859 | |
105 | Q | A | -1.4147 | |
106 | I | A | 0.5838 | |
107 | G | A | -0.0490 | |
108 | G | A | -0.4424 |