| Chain sequence(s) |
C: DIQMTQSPSSLSASVGDRVTITCRASQGIRNYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYCQRYNRAPYTFGQGTKVEIKGGGSGGGSGGGSGGGSEVQLVESGGGLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSAITWNSGHIDYADSVEGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAKVSYLSTASSLDYWGQGTLVTVS
input PDB |
| Selected Chain(s) | C |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with C chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | D | C | -2.4894 | |
| 3 | I | C | 0.0000 | |
| 4 | Q | C | -2.1905 | |
| 5 | M | C | 0.0000 | |
| 6 | T | C | -1.0907 | |
| 7 | Q | C | 0.0000 | |
| 8 | S | C | -0.7989 | |
| 9 | P | C | -0.5952 | |
| 10 | S | C | -1.0355 | |
| 11 | S | C | -1.2803 | |
| 12 | L | C | -1.0007 | |
| 13 | S | C | -1.2450 | |
| 14 | A | C | -0.9876 | |
| 15 | S | C | -0.7790 | |
| 16 | V | C | 0.0189 | |
| 17 | G | C | -0.9490 | |
| 18 | D | C | -1.8378 | |
| 19 | R | C | -2.3879 | |
| 20 | V | C | 0.0000 | |
| 21 | T | C | -0.6396 | |
| 22 | I | C | 0.0000 | |
| 23 | T | C | -0.6973 | |
| 24 | C | C | 0.0000 | |
| 25 | R | C | -2.0389 | |
| 26 | A | C | -1.7386 | |
| 27 | S | C | -1.8409 | |
| 28 | Q | C | -2.2063 | |
| 29 | G | C | -2.0959 | |
| 30 | I | C | 0.0000 | |
| 31 | R | C | -2.8917 | |
| 32 | N | C | -2.1975 | |
| 33 | Y | C | -1.0303 | |
| 34 | L | C | 0.0000 | |
| 35 | A | C | 0.0000 | |
| 36 | W | C | 0.0000 | |
| 37 | Y | C | 0.0000 | |
| 38 | Q | C | 0.0000 | |
| 39 | Q | C | -0.8160 | |
| 40 | K | C | 0.0000 | |
| 41 | P | C | -0.7496 | |
| 42 | G | C | -1.0689 | |
| 43 | K | C | -1.4243 | |
| 44 | A | C | 0.0000 | |
| 45 | P | C | 0.0000 | |
| 46 | K | C | -0.8616 | |
| 47 | L | C | 0.0000 | |
| 48 | L | C | 0.0000 | |
| 49 | I | C | 0.0000 | |
| 50 | Y | C | 0.3067 | |
| 51 | A | C | -0.2402 | |
| 52 | A | C | 0.0000 | |
| 53 | S | C | -0.4473 | |
| 54 | T | C | 0.0644 | |
| 55 | L | C | 0.2588 | |
| 56 | Q | C | -0.1927 | |
| 57 | S | C | -0.3376 | |
| 58 | G | C | -0.4951 | |
| 59 | V | C | -0.2430 | |
| 60 | P | C | -0.3303 | |
| 61 | S | C | -0.4081 | |
| 62 | R | C | -0.8025 | |
| 63 | F | C | 0.0000 | |
| 64 | S | C | -0.3277 | |
| 65 | G | C | -0.3012 | |
| 66 | S | C | -0.8502 | |
| 67 | G | C | -1.5718 | |
| 68 | S | C | -1.9848 | |
| 69 | G | C | -2.1750 | |
| 70 | T | C | -2.1301 | |
| 71 | D | C | -2.3123 | |
| 72 | F | C | 0.0000 | |
| 73 | T | C | -0.7204 | |
| 74 | L | C | 0.0000 | |
| 75 | T | C | -0.6188 | |
| 76 | I | C | 0.0000 | |
| 77 | S | C | -1.3275 | |
| 78 | S | C | -1.1815 | |
| 79 | L | C | 0.0000 | |
| 80 | Q | C | -0.5890 | |
| 81 | P | C | -1.1472 | |
| 82 | E | C | -1.1498 | |
| 83 | D | C | 0.0000 | |
| 84 | V | C | -1.4042 | |
| 85 | A | C | 0.0000 | |
| 86 | T | C | -1.2152 | |
| 87 | Y | C | 0.0000 | |
| 88 | Y | C | 0.0000 | |
| 89 | C | C | 0.0000 | |
| 90 | Q | C | 0.0000 | |
| 91 | R | C | 0.0000 | |
| 92 | Y | C | 0.0000 | |
| 93 | N | C | -1.8678 | |
| 94 | R | C | -2.2337 | |
| 95 | A | C | -1.3945 | |
| 96 | P | C | -1.4455 | |
| 97 | Y | C | -0.9095 | |
| 98 | T | C | -1.1450 | |
| 99 | F | C | 0.0000 | |
| 100 | G | C | 0.0000 | |
| 101 | Q | C | -1.9820 | |
| 102 | G | C | 0.0000 | |
| 103 | T | C | 0.0000 | |
| 104 | K | C | -2.4151 | |
| 105 | V | C | 0.0000 | |
| 106 | E | C | -2.6129 | |
| 107 | I | C | -1.5549 | |
| 108 | K | C | -2.2177 | |
| 109 | G | C | -1.9104 | |
| 110 | G | C | -1.4783 | |
| 111 | G | C | -1.5595 | |
| 112 | S | C | -1.0964 | |
| 113 | G | C | -1.1350 | |
| 114 | G | C | -1.2288 | |
| 115 | G | C | -1.4212 | |
| 116 | S | C | -1.5309 | |
| 117 | G | C | -1.6091 | |
| 118 | G | C | -1.1743 | |
| 119 | G | C | -1.2117 | |
| 120 | S | C | -1.3306 | |
| 121 | G | C | -1.2492 | |
| 122 | G | C | -1.6351 | |
| 123 | G | C | -1.9381 | |
| 124 | S | C | -1.8213 | |
| 125 | E | C | -2.3894 | |
| 126 | V | C | -1.4654 | |
| 127 | Q | C | -1.5133 | |
| 128 | L | C | 0.0000 | |
| 129 | V | C | 0.4829 | |
| 130 | E | C | 0.1007 | |
| 131 | S | C | -0.4406 | |
| 132 | G | C | -0.8653 | |
| 133 | G | C | -0.0164 | |
| 134 | G | C | 0.7422 | |
| 135 | L | C | 1.3132 | |
| 136 | V | C | 0.0000 | |
| 137 | Q | C | -1.9460 | |
| 138 | P | C | -2.0069 | |
| 139 | G | C | -2.3231 | |
| 140 | R | C | -2.9702 | |
| 141 | S | C | -2.0779 | |
| 142 | L | C | -1.3388 | |
| 143 | R | C | -2.1457 | |
| 144 | L | C | 0.0000 | |
| 145 | S | C | -0.5346 | |
| 146 | C | C | 0.0000 | |
| 147 | A | C | -0.2971 | |
| 148 | A | C | 0.0000 | |
| 149 | S | C | -0.7850 | |
| 150 | G | C | -1.2019 | |
| 151 | F | C | -0.8134 | |
| 152 | T | C | -0.8423 | |
| 153 | F | C | 0.0000 | |
| 154 | D | C | -2.1631 | |
| 155 | D | C | -1.5897 | |
| 156 | Y | C | -0.3736 | |
| 157 | A | C | 0.0000 | |
| 158 | M | C | 0.0000 | |
| 159 | H | C | 0.0000 | |
| 160 | W | C | 0.0000 | |
| 161 | V | C | 0.0000 | |
| 162 | R | C | 0.0000 | |
| 163 | Q | C | -0.6905 | |
| 164 | A | C | -1.0691 | |
| 165 | P | C | -0.7798 | |
| 166 | G | C | -1.4596 | |
| 167 | K | C | -2.3997 | |
| 168 | G | C | -1.6857 | |
| 169 | L | C | 0.0000 | |
| 170 | E | C | -1.2449 | |
| 171 | W | C | 0.0000 | |
| 172 | V | C | 0.0000 | |
| 173 | S | C | 0.0000 | |
| 174 | A | C | 0.0000 | |
| 175 | I | C | 0.0000 | |
| 176 | T | C | -0.4902 | |
| 177 | W | C | -0.8115 | |
| 178 | N | C | -1.7637 | |
| 179 | S | C | -1.0610 | |
| 180 | G | C | -0.9922 | |
| 181 | H | C | -0.9704 | |
| 182 | I | C | 0.2252 | |
| 183 | D | C | -0.8943 | |
| 184 | Y | C | -1.0287 | |
| 185 | A | C | 0.0000 | |
| 186 | D | C | -2.5989 | |
| 187 | S | C | -1.7222 | |
| 188 | V | C | 0.0000 | |
| 189 | E | C | -2.8133 | |
| 190 | G | C | -1.7797 | |
| 191 | R | C | -1.5231 | |
| 192 | F | C | 0.0000 | |
| 193 | T | C | -0.8198 | |
| 194 | I | C | 0.0000 | |
| 195 | S | C | -0.3570 | |
| 196 | R | C | -1.1563 | |
| 197 | D | C | -1.6884 | |
| 198 | N | C | -2.1797 | |
| 199 | A | C | -1.5446 | |
| 200 | K | C | -2.2484 | |
| 201 | N | C | -1.8407 | |
| 202 | S | C | 0.0000 | |
| 203 | L | C | 0.0000 | |
| 204 | Y | C | -0.6110 | |
| 205 | L | C | 0.0000 | |
| 206 | Q | C | -1.3177 | |
| 207 | M | C | 0.0000 | |
| 208 | N | C | -1.9741 | |
| 209 | S | C | -1.8846 | |
| 210 | L | C | 0.0000 | |
| 211 | R | C | -2.4617 | |
| 212 | A | C | -1.6799 | |
| 213 | E | C | -2.1803 | |
| 214 | D | C | 0.0000 | |
| 215 | T | C | -0.4132 | |
| 216 | A | C | 0.0000 | |
| 217 | V | C | 0.6680 | |
| 218 | Y | C | 0.0000 | |
| 219 | Y | C | 0.0000 | |
| 220 | C | C | 0.0000 | |
| 221 | A | C | 0.0000 | |
| 222 | K | C | 0.0000 | |
| 223 | V | C | 0.0000 | |
| 224 | S | C | 0.0000 | |
| 225 | Y | C | 1.7683 | |
| 226 | L | C | 1.8943 | |
| 227 | S | C | 0.9012 | |
| 228 | T | C | 0.5346 | |
| 229 | A | C | 0.0515 | |
| 230 | S | C | 0.0000 | |
| 231 | S | C | 0.0000 | |
| 232 | L | C | 0.0000 | |
| 233 | D | C | 0.0000 | |
| 234 | Y | C | -0.0873 | |
| 235 | W | C | -0.2121 | |
| 236 | G | C | 0.0000 | |
| 237 | Q | C | -1.3195 | |
| 238 | G | C | -0.2558 | |
| 239 | T | C | 0.3514 | |
| 240 | L | C | 1.4575 | |
| 241 | V | C | 0.0000 | |
| 242 | T | C | 0.2090 | |
| 243 | V | C | 0.0000 | |
| 244 | S | C | -1.0596 |