Project name: 765fed9b69e0037

Status: done

Started: 2024-12-19 08:17:25
Settings
Chain sequence(s) K: DVQITQSPSYLAASPGETITINCRASKSISKYLAWYQEKPGKTNELLIYSGSTLQSGIPSRFRGSGSGTDFTLTISSLEPEDFAMYYCQQHNEYTLTFGGGTK
L: DVQLQESGPGLVKPSQSLSLTCTVSGYSITSDYAWNWIRQFPGNKLEWMGYISYTLTTGYNPSLKSRISITRDSSKNQFFLQLNSVTTEDTATYYCARSGWLLPYWYFDVWGAGTTVTVSS
input PDB
Selected Chain(s) L,K
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:42)
Show buried residues

Minimal score value
-3.0958
Maximal score value
1.8476
Average score
-0.5687
Total score value
-127.3922

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D L -2.1083
2 V L -1.3865
3 Q L -1.9230
4 L L 0.0000
5 Q L -1.5747
6 E L 0.0000
7 S L -0.6803
8 G L -0.3402
9 P L -0.0097
11 G L 0.2660
12 L L 0.9779
13 V L -0.3798
14 K L -1.8211
15 P L -1.7164
16 S L -1.6133
17 Q L -2.2635
18 S L -1.9734
19 L L 0.0000
20 S L -0.6032
21 L L 0.0000
22 T L -0.3642
23 C L 0.0000
24 T L -1.1188
25 V L 0.0000
26 S L -1.4049
27 G L -1.2462
28 Y L -0.6765
29 S L -0.5033
30 I L 0.0000
31 T L -0.1140
35 S L -0.3358
36 D L -0.2522
37 Y L 0.6641
38 A L 0.0000
39 W L 0.0000
40 N L 0.0000
41 W L 0.0000
42 I L 0.0000
43 R L 0.0000
44 Q L -0.9077
45 F L -1.0454
46 P L -1.0909
47 G L -1.3475
48 N L -1.6516
49 K L -2.1900
50 L L -1.0831
51 E L -0.6283
52 W L 0.0000
53 M L 0.0000
54 G L 0.0000
55 Y L 0.2965
56 I L 0.0000
57 S L 0.0000
58 Y L 0.6908
59 T L 0.9017
63 L L 1.5490
64 T L 0.8100
65 T L 0.3996
66 G L -0.2046
67 Y L -0.4355
68 N L 0.0000
69 P L -0.9441
70 S L -0.8977
71 L L 0.0000
72 K L -2.0357
74 S L -1.4557
75 R L -1.6142
76 I L 0.0000
77 S L -0.7944
78 I L 0.0256
79 T L -0.0311
80 R L -0.5868
81 D L -1.5592
82 S L -1.4108
83 S L -1.4595
84 K L -2.3451
85 N L -1.6296
86 Q L -1.2521
87 F L 0.0000
88 F L -0.0054
89 L L 0.0000
90 Q L -1.1627
91 L L 0.0000
92 N L -2.2168
93 S L -1.4512
94 V L 0.0000
95 T L -1.3460
96 T L -1.3041
97 E L -1.9054
98 D L 0.0000
99 T L -0.5002
100 A L 0.0000
101 T L -0.1266
102 Y L 0.0000
103 Y L -0.0769
104 C L 0.0000
105 A L 0.0000
106 R L -0.0266
107 S L 0.0000
108 G L 0.9971
109 W L 1.5943
110 L L 1.8476
111 L L 1.3236
112A P L 0.9399
112 Y L 1.3973
113 W L 0.0000
114 Y L 0.6731
115 F L 0.0000
116 D L -0.8824
117 V L -0.6945
118 W L 0.0000
119 G L 0.0000
120 A L -0.9580
121 G L -0.6048
122 T L -0.3655
123 T L -0.0231
124 V L 0.0000
125 T L -0.1778
126 V L 0.0000
127 S L -0.7304
128 S L -0.5412
1 D K -2.2237
2 V K 0.0000
3 Q K -2.1075
4 I K -1.6080
5 T K -1.3723
6 Q K 0.0000
7 S K -0.6990
8 P K -0.1859
9 S K -0.0774
10 Y K 0.7530
11 L K 0.4625
12 A K 0.3236
13 A K -0.4434
14 S K -0.8730
15 P K -1.6675
16 G K -1.8391
17 E K -2.2894
18 T K -1.0893
19 I K -0.1185
20 T K -0.2376
21 I K 0.0000
22 N K -1.5976
23 C K 0.0000
24 R K -3.0958
25 A K 0.0000
26 S K -1.9756
27 K K -1.9925
28 S K -1.4633
29 I K 0.0000
36 S K -1.1651
37 K K -1.5867
38 Y K -0.4954
39 L K 0.0000
40 A K 0.0000
41 W K 0.0000
42 Y K 0.0000
43 Q K 0.0000
44 E K -0.9815
45 K K -1.4038
46 P K -1.0906
47 G K -1.5649
48 K K -2.4002
49 T K -1.7296
50 N K 0.0000
51 E K -2.0197
52 L K 0.0000
53 L K 0.0000
54 I K 0.0000
55 Y K 0.3466
56 S K 0.0314
57 G K -0.5252
65 S K -0.7523
66 T K -0.2068
67 L K -0.1589
68 Q K -0.3861
69 S K -0.3673
70 G K -0.5055
71 I K -0.4252
72 P K -0.6479
74 S K -0.8876
75 R K -1.2748
76 F K 0.0000
77 R K -2.0382
78 G K 0.0000
79 S K -1.2205
80 G K -1.5009
83 S K -1.4073
84 G K -1.5804
85 T K -2.1290
86 D K -2.9877
87 F K 0.0000
88 T K -1.2919
89 L K 0.0000
90 T K 0.0000
91 I K 0.0000
92 S K -1.3782
93 S K -1.4591
94 L K 0.0000
95 E K -1.8908
96 P K -1.4407
97 E K -1.9514
98 D K -0.8396
99 F K 0.1716
100 A K -0.2362
101 M K -0.2263
102 Y K 0.0000
103 Y K 0.0000
104 C K 0.0000
105 Q K 0.0000
106 Q K 0.0000
107 H K 0.0000
108 N K -0.3014
109 E K -0.5988
114 Y K 0.0179
115 T K -0.4811
116 L K 0.0000
117 T K -0.7312
118 F K 0.0000
119 G K -1.0293
120 G K -0.8171
121 G K -0.8513
122 T K 0.0000
123 K K -0.8235
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Laboratory of Theory of Biopolymers 2018