| Chain sequence(s) |
H: QVQLVESGGGVVQPGESLKISCAASGFTFSSYGMHWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARSTYYYGASGYDYYFEPWGPGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQHIRSSLAWYQQKPGKAPKLLIYGASSRATGIPDRFSGSGSGTDFTLTISSLQPEDFATYYCQHTYITPYTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:00)
[INFO] Main: Simulation completed successfully. (00:00:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 0 | Q | H | -1.3099 | |
| 1 | V | H | -0.7019 | |
| 2 | Q | H | -0.8006 | |
| 3 | L | H | 0.0000 | |
| 4 | V | H | 1.3791 | |
| 5 | E | H | 0.0000 | |
| 6 | S | H | -0.1179 | |
| 7 | G | H | -0.7692 | |
| 8 | G | H | 0.1436 | |
| 9 | G | H | 0.9278 | |
| 10 | V | H | 1.5536 | |
| 11 | V | H | 0.0000 | |
| 12 | Q | H | -1.7813 | |
| 13 | P | H | -1.9068 | |
| 14 | G | H | -2.0566 | |
| 15 | E | H | -2.2148 | |
| 16 | S | H | -1.6084 | |
| 17 | L | H | -1.0032 | |
| 18 | K | H | -1.9354 | |
| 19 | I | H | 0.0000 | |
| 20 | S | H | -0.3135 | |
| 21 | C | H | 0.0000 | |
| 22 | A | H | 0.0344 | |
| 23 | A | H | -0.3682 | |
| 24 | S | H | -0.5501 | |
| 25 | G | H | -0.8572 | |
| 26 | F | H | -0.2993 | |
| 27 | T | H | -0.1842 | |
| 28 | F | H | 0.0000 | |
| 29 | S | H | -0.8484 | |
| 30 | S | H | -0.1121 | |
| 31 | Y | H | 0.2096 | |
| 32 | G | H | 0.0112 | |
| 33 | M | H | 0.0000 | |
| 34 | H | H | 0.0000 | |
| 35 | W | H | 0.0000 | |
| 36 | V | H | 0.0000 | |
| 37 | R | H | 0.0000 | |
| 38 | Q | H | -0.7255 | |
| 39 | A | H | -1.0375 | |
| 40 | P | H | -0.9807 | |
| 41 | G | H | -1.5076 | |
| 42 | K | H | -2.3901 | |
| 43 | G | H | -1.6357 | |
| 44 | L | H | 0.0000 | |
| 45 | E | H | -1.2611 | |
| 46 | W | H | 0.0000 | |
| 47 | V | H | 0.0000 | |
| 48 | S | H | 0.0000 | |
| 49 | A | H | 0.0000 | |
| 50 | I | H | 0.0000 | |
| 51 | S | H | -0.3342 | |
| 52 | G | H | -0.5264 | |
| 53 | S | H | -0.7355 | |
| 54 | G | H | -0.8362 | |
| 55 | G | H | -0.7463 | |
| 56 | S | H | -0.2897 | |
| 57 | T | H | 0.2598 | |
| 58 | Y | H | 0.6400 | |
| 59 | Y | H | -0.3286 | |
| 60 | A | H | -1.1655 | |
| 61 | D | H | -2.3348 | |
| 62 | S | H | -1.7207 | |
| 63 | V | H | 0.0000 | |
| 64 | K | H | -2.4250 | |
| 65 | G | H | -1.6994 | |
| 66 | R | H | -1.2541 | |
| 67 | F | H | 0.0000 | |
| 68 | T | H | -0.6687 | |
| 69 | I | H | 0.0000 | |
| 70 | S | H | -0.4671 | |
| 71 | R | H | -1.0928 | |
| 72 | D | H | -1.6511 | |
| 73 | N | H | -1.8041 | |
| 74 | S | H | -1.6324 | |
| 75 | K | H | -2.4356 | |
| 76 | N | H | -1.8567 | |
| 77 | T | H | -0.9977 | |
| 78 | L | H | 0.0000 | |
| 79 | Y | H | -0.4644 | |
| 80 | L | H | 0.0000 | |
| 81 | Q | H | -1.1249 | |
| 82 | M | H | 0.0000 | |
| 83 | N | H | -1.7221 | |
| 84 | S | H | -1.6531 | |
| 85 | L | H | 0.0000 | |
| 86 | R | H | -2.7629 | |
| 87 | A | H | -1.9100 | |
| 88 | E | H | -2.3099 | |
| 89 | D | H | 0.0000 | |
| 90 | T | H | -0.4253 | |
| 91 | A | H | 0.0000 | |
| 92 | V | H | 0.9025 | |
| 93 | Y | H | 0.0000 | |
| 94 | Y | H | 0.0000 | |
| 95 | C | H | 0.0000 | |
| 96 | A | H | 0.0000 | |
| 97 | R | H | -0.3008 | |
| 98 | S | H | 0.0000 | |
| 99 | T | H | 0.8322 | |
| 100 | Y | H | 1.9990 | |
| 101 | Y | H | 1.7572 | |
| 102 | Y | H | 1.5924 | |
| 103 | G | H | 0.3877 | |
| 104 | A | H | -0.0952 | |
| 105 | S | H | -0.0947 | |
| 106 | G | H | 0.3707 | |
| 107 | Y | H | 1.5755 | |
| 108 | D | H | 1.3840 | |
| 109 | Y | H | 1.5030 | |
| 110 | Y | H | 0.6179 | |
| 111 | F | H | 0.0000 | |
| 112 | E | H | -0.8067 | |
| 113 | P | H | -0.8052 | |
| 114 | W | H | 0.0000 | |
| 115 | G | H | 0.0000 | |
| 116 | P | H | -0.3821 | |
| 117 | G | H | 0.1759 | |
| 118 | T | H | 0.7513 | |
| 119 | L | H | 1.7399 | |
| 120 | V | H | 0.0000 | |
| 121 | T | H | 0.3685 | |
| 122 | V | H | 0.0000 | |
| 123 | S | H | -0.6632 | |
| 124 | S | H | -0.5922 | |
| 125 | D | L | -2.0098 | |
| 126 | I | L | 0.0000 | |
| 127 | Q | L | -2.1923 | |
| 128 | M | L | 0.0000 | |
| 129 | T | L | -1.2858 | |
| 130 | Q | L | 0.0000 | |
| 131 | S | L | -0.7345 | |
| 132 | P | L | -0.5983 | |
| 133 | S | L | -0.9676 | |
| 134 | S | L | -1.1334 | |
| 135 | L | L | -0.6520 | |
| 136 | S | L | -0.7041 | |
| 137 | A | L | 0.0000 | |
| 138 | S | L | -0.1490 | |
| 139 | V | L | 0.7172 | |
| 140 | G | L | -0.7089 | |
| 141 | D | L | -1.6688 | |
| 142 | R | L | -2.3426 | |
| 143 | V | L | 0.0000 | |
| 144 | T | L | -0.6347 | |
| 145 | I | L | 0.0000 | |
| 146 | T | L | -0.9693 | |
| 147 | C | L | 0.0000 | |
| 148 | R | L | -3.0413 | |
| 149 | A | L | 0.0000 | |
| 150 | S | L | -2.2566 | |
| 151 | Q | L | -2.8582 | |
| 152 | H | L | -2.5759 | |
| 153 | I | L | 0.0000 | |
| 154 | R | L | -2.6009 | |
| 155 | S | L | -1.4918 | |
| 156 | S | L | -0.4057 | |
| 157 | L | L | 0.0000 | |
| 158 | A | L | 0.0000 | |
| 159 | W | L | 0.0000 | |
| 160 | Y | L | 0.0000 | |
| 161 | Q | L | -0.9659 | |
| 162 | Q | L | 0.0000 | |
| 163 | K | L | -2.1518 | |
| 164 | P | L | -1.4655 | |
| 165 | G | L | -1.6523 | |
| 166 | K | L | -2.5328 | |
| 167 | A | L | -1.5295 | |
| 168 | P | L | 0.0000 | |
| 169 | K | L | -1.9614 | |
| 170 | L | L | 0.0000 | |
| 171 | L | L | 0.0000 | |
| 172 | I | L | 0.0000 | |
| 173 | Y | L | -0.2182 | |
| 174 | G | L | -0.8490 | |
| 175 | A | L | 0.0000 | |
| 176 | S | L | -0.7945 | |
| 177 | S | L | -0.8370 | |
| 178 | R | L | -1.6862 | |
| 179 | A | L | -0.9741 | |
| 180 | T | L | -0.6046 | |
| 181 | G | L | -0.9199 | |
| 182 | I | L | 0.0000 | |
| 183 | P | L | -1.3878 | |
| 184 | D | L | -2.3082 | |
| 185 | R | L | -1.6191 | |
| 186 | F | L | 0.0000 | |
| 187 | S | L | -1.0285 | |
| 188 | G | L | -0.5972 | |
| 189 | S | L | -0.8303 | |
| 190 | G | L | -1.4372 | |
| 191 | S | L | -1.8312 | |
| 192 | G | L | -2.4331 | |
| 193 | T | L | -2.6645 | |
| 194 | D | L | -3.1593 | |
| 195 | F | L | 0.0000 | |
| 196 | T | L | -0.9089 | |
| 197 | L | L | 0.0000 | |
| 198 | T | L | -0.6133 | |
| 199 | I | L | 0.0000 | |
| 200 | S | L | -1.6827 | |
| 201 | S | L | -1.2902 | |
| 202 | L | L | 0.0000 | |
| 203 | Q | L | -0.7791 | |
| 204 | P | L | -0.6488 | |
| 205 | E | L | -1.8871 | |
| 206 | D | L | 0.0000 | |
| 207 | F | L | -0.5658 | |
| 208 | A | L | 0.0000 | |
| 209 | T | L | -1.2504 | |
| 210 | Y | L | 0.0000 | |
| 211 | Y | L | 0.0000 | |
| 212 | C | L | 0.0000 | |
| 213 | Q | L | 0.0000 | |
| 214 | H | L | 0.0000 | |
| 215 | T | L | 1.2675 | |
| 216 | Y | L | 1.5145 | |
| 217 | I | L | 2.0438 | |
| 218 | T | L | 0.8255 | |
| 219 | P | L | -0.0040 | |
| 220 | Y | L | 0.0000 | |
| 221 | T | L | -0.4694 | |
| 222 | F | L | -0.4913 | |
| 223 | G | L | 0.0000 | |
| 224 | Q | L | -1.6146 | |
| 225 | G | L | 0.0000 | |
| 226 | T | L | 0.0000 | |
| 227 | K | L | -2.1467 | |
| 228 | V | L | 0.0000 | |
| 229 | E | L | -0.9100 | |
| 230 | I | L | 0.9385 | |
| 231 | K | L | -0.7858 |