| Chain sequence(s) |
A: MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNYEAAAKEAAAKEAAAKEAAAKMVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNY
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:11:56)
[INFO] Main: Simulation completed successfully. (00:11:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | A | 1.8101 | |
| 2 | V | A | 1.8832 | |
| 3 | G | A | 0.3321 | |
| 4 | G | A | -0.1519 | |
| 5 | G | A | -0.3619 | |
| 6 | T | A | -0.4201 | |
| 7 | V | A | -0.0675 | |
| 8 | K | A | -2.0733 | |
| 9 | K | A | -2.6358 | |
| 10 | D | A | -2.9629 | |
| 11 | L | A | -1.7925 | |
| 12 | K | A | -2.8240 | |
| 13 | K | A | -2.4577 | |
| 14 | A | A | -1.1827 | |
| 15 | I | A | -0.9904 | |
| 16 | Q | A | -1.3829 | |
| 17 | Y | A | -0.0005 | |
| 18 | Y | A | 0.5814 | |
| 19 | V | A | 0.0000 | |
| 20 | K | A | -0.7994 | |
| 21 | A | A | 0.2564 | |
| 22 | C | A | 0.0000 | |
| 23 | E | A | -0.6757 | |
| 24 | L | A | 0.5248 | |
| 25 | N | A | -0.3243 | |
| 26 | E | A | -0.0125 | |
| 27 | M | A | 1.2289 | |
| 28 | F | A | 2.1665 | |
| 29 | G | A | 0.0000 | |
| 30 | C | A | 0.0000 | |
| 31 | L | A | 1.4083 | |
| 32 | S | A | 1.1041 | |
| 33 | L | A | 0.0000 | |
| 34 | V | A | 0.4068 | |
| 35 | S | A | -0.2511 | |
| 36 | N | A | -0.8434 | |
| 37 | S | A | -1.4072 | |
| 38 | Q | A | -1.9830 | |
| 39 | I | A | 0.0000 | |
| 40 | N | A | -3.1437 | |
| 41 | K | A | -3.5312 | |
| 42 | Q | A | -3.0655 | |
| 43 | K | A | -3.0150 | |
| 44 | L | A | 0.0000 | |
| 45 | F | A | -1.6077 | |
| 46 | Q | A | -2.2036 | |
| 47 | Y | A | -1.6501 | |
| 48 | L | A | 0.0000 | |
| 49 | S | A | -1.4396 | |
| 50 | K | A | -1.8769 | |
| 51 | A | A | 0.0000 | |
| 52 | C | A | 0.0000 | |
| 53 | E | A | -2.2141 | |
| 54 | L | A | -0.8115 | |
| 55 | N | A | -1.7552 | |
| 56 | S | A | 0.0000 | |
| 57 | G | A | 0.0000 | |
| 58 | N | A | -0.4759 | |
| 59 | G | A | 0.0000 | |
| 60 | C | A | 0.0000 | |
| 61 | R | A | -0.9021 | |
| 62 | F | A | 0.0000 | |
| 63 | L | A | 0.0000 | |
| 64 | G | A | 0.0000 | |
| 65 | D | A | -1.4962 | |
| 66 | F | A | 0.0000 | |
| 67 | Y | A | -2.2220 | |
| 68 | E | A | -2.4431 | |
| 69 | N | A | -2.3177 | |
| 70 | G | A | -2.7391 | |
| 71 | K | A | -2.7365 | |
| 72 | Y | A | -1.9353 | |
| 73 | V | A | -1.8139 | |
| 74 | K | A | -2.8306 | |
| 75 | K | A | -3.4999 | |
| 76 | D | A | -2.3546 | |
| 77 | L | A | -2.3089 | |
| 78 | R | A | -2.7196 | |
| 79 | K | A | -2.4882 | |
| 80 | A | A | 0.0000 | |
| 81 | A | A | 0.0000 | |
| 82 | Q | A | -2.0568 | |
| 83 | Y | A | -1.3403 | |
| 84 | Y | A | 0.0000 | |
| 85 | S | A | -1.1554 | |
| 86 | K | A | -1.5461 | |
| 87 | A | A | 0.0000 | |
| 88 | C | A | 0.0000 | |
| 89 | G | A | -1.2779 | |
| 90 | L | A | -1.1808 | |
| 91 | N | A | -2.0182 | |
| 92 | D | A | 0.0000 | |
| 93 | Q | A | -1.8106 | |
| 94 | D | A | -1.7266 | |
| 95 | G | A | 0.0000 | |
| 96 | C | A | 0.0000 | |
| 97 | L | A | -0.5791 | |
| 98 | I | A | 0.2791 | |
| 99 | L | A | 0.0000 | |
| 100 | G | A | 0.0000 | |
| 101 | Y | A | 0.7914 | |
| 102 | K | A | -0.2832 | |
| 103 | Q | A | -0.7824 | |
| 104 | Y | A | -0.5221 | |
| 105 | A | A | -0.4293 | |
| 106 | G | A | -0.8511 | |
| 107 | K | A | -1.4622 | |
| 108 | G | A | -1.5790 | |
| 109 | V | A | -0.3900 | |
| 110 | V | A | 0.4746 | |
| 111 | K | A | -1.6141 | |
| 112 | N | A | -1.8422 | |
| 113 | E | A | -2.2717 | |
| 114 | K | A | -3.1698 | |
| 115 | Q | A | -3.0079 | |
| 116 | A | A | 0.0000 | |
| 117 | V | A | -1.9473 | |
| 118 | K | A | -2.8747 | |
| 119 | T | A | -1.7673 | |
| 120 | F | A | 0.0000 | |
| 121 | E | A | -2.0106 | |
| 122 | K | A | -2.1921 | |
| 123 | A | A | 0.0000 | |
| 124 | C | A | -2.0448 | |
| 125 | R | A | -2.4438 | |
| 126 | L | A | -1.5531 | |
| 127 | G | A | -1.6923 | |
| 128 | S | A | 0.0000 | |
| 129 | E | A | -2.8284 | |
| 130 | D | A | -2.8251 | |
| 131 | A | A | 0.0000 | |
| 132 | C | A | -1.8814 | |
| 133 | G | A | -1.9484 | |
| 134 | I | A | -1.2918 | |
| 135 | L | A | -1.7874 | |
| 136 | N | A | -2.4074 | |
| 137 | N | A | -2.3144 | |
| 138 | Y | A | -1.8300 | |
| 139 | E | A | -3.0884 | |
| 140 | A | A | -2.5241 | |
| 141 | A | A | -2.0670 | |
| 142 | A | A | -2.3621 | |
| 143 | K | A | -3.4661 | |
| 144 | E | A | -3.4262 | |
| 145 | A | A | -2.4506 | |
| 146 | A | A | -2.0897 | |
| 147 | A | A | -2.4320 | |
| 148 | K | A | -3.4423 | |
| 149 | E | A | -3.2841 | |
| 150 | A | A | -2.4137 | |
| 151 | A | A | -2.1033 | |
| 152 | A | A | -2.1942 | |
| 153 | K | A | -3.2438 | |
| 154 | E | A | -3.1827 | |
| 155 | A | A | -1.7596 | |
| 156 | A | A | -1.2159 | |
| 157 | A | A | -1.3308 | |
| 158 | K | A | -1.8585 | |
| 159 | M | A | -0.3980 | |
| 160 | V | A | 1.0089 | |
| 161 | G | A | -0.2559 | |
| 162 | G | A | -0.5810 | |
| 163 | G | A | -0.5552 | |
| 164 | T | A | -0.3430 | |
| 165 | V | A | -0.3888 | |
| 166 | K | A | -2.3591 | |
| 167 | K | A | -3.1562 | |
| 168 | D | A | -3.1412 | |
| 169 | L | A | -2.5098 | |
| 170 | K | A | -3.5471 | |
| 171 | K | A | -3.1326 | |
| 172 | A | A | 0.0000 | |
| 173 | I | A | 0.0000 | |
| 174 | Q | A | -1.8767 | |
| 175 | Y | A | -0.3469 | |
| 176 | Y | A | 0.1076 | |
| 177 | V | A | 0.0000 | |
| 178 | K | A | -1.2068 | |
| 179 | A | A | -0.2792 | |
| 180 | C | A | 0.0000 | |
| 181 | E | A | -0.6200 | |
| 182 | L | A | 0.5291 | |
| 183 | N | A | -0.4307 | |
| 184 | E | A | -0.3586 | |
| 185 | M | A | 0.8612 | |
| 186 | F | A | 0.8436 | |
| 187 | G | A | 0.0000 | |
| 188 | C | A | 0.0000 | |
| 189 | L | A | 1.2271 | |
| 190 | S | A | 0.8333 | |
| 191 | L | A | 0.0000 | |
| 192 | V | A | 0.3310 | |
| 193 | S | A | -0.1533 | |
| 194 | N | A | -0.8671 | |
| 195 | S | A | -1.3400 | |
| 196 | Q | A | -2.0634 | |
| 197 | I | A | 0.0000 | |
| 198 | N | A | -3.1793 | |
| 199 | K | A | -3.3124 | |
| 200 | Q | A | -2.9765 | |
| 201 | K | A | -3.1531 | |
| 202 | L | A | 0.0000 | |
| 203 | F | A | -1.5673 | |
| 204 | Q | A | -2.2523 | |
| 205 | Y | A | -1.8515 | |
| 206 | L | A | 0.0000 | |
| 207 | S | A | -1.3389 | |
| 208 | K | A | -1.8680 | |
| 209 | A | A | 0.0000 | |
| 210 | C | A | 0.0000 | |
| 211 | E | A | -2.2332 | |
| 212 | L | A | -0.6393 | |
| 213 | N | A | -1.5347 | |
| 214 | S | A | 0.0000 | |
| 215 | G | A | 0.0000 | |
| 216 | N | A | 0.0000 | |
| 217 | G | A | 0.0000 | |
| 218 | C | A | 0.0000 | |
| 219 | R | A | -0.7766 | |
| 220 | F | A | 0.0000 | |
| 221 | L | A | 0.0000 | |
| 222 | G | A | 0.0000 | |
| 223 | D | A | -1.5140 | |
| 224 | F | A | 0.0000 | |
| 225 | Y | A | -2.3482 | |
| 226 | E | A | -2.6218 | |
| 227 | N | A | -2.4925 | |
| 228 | G | A | -2.4911 | |
| 229 | K | A | -1.8378 | |
| 230 | Y | A | -0.7295 | |
| 231 | V | A | -1.3692 | |
| 232 | K | A | -2.6404 | |
| 233 | K | A | -3.4577 | |
| 234 | D | A | -2.6212 | |
| 235 | L | A | -2.4895 | |
| 236 | R | A | -2.8558 | |
| 237 | K | A | -2.7332 | |
| 238 | A | A | 0.0000 | |
| 239 | A | A | 0.0000 | |
| 240 | Q | A | -2.1552 | |
| 241 | Y | A | -1.3577 | |
| 242 | Y | A | 0.0000 | |
| 243 | S | A | -1.1968 | |
| 244 | K | A | -1.7931 | |
| 245 | A | A | 0.0000 | |
| 246 | C | A | 0.0000 | |
| 247 | G | A | -1.2826 | |
| 248 | L | A | -1.1529 | |
| 249 | N | A | -1.8194 | |
| 250 | D | A | -1.5345 | |
| 251 | Q | A | -1.8711 | |
| 252 | D | A | -1.4361 | |
| 253 | G | A | 0.0000 | |
| 254 | C | A | 0.0000 | |
| 255 | L | A | -0.5041 | |
| 256 | I | A | 0.3660 | |
| 257 | L | A | 0.0000 | |
| 258 | G | A | 0.0000 | |
| 259 | Y | A | 0.7180 | |
| 260 | K | A | -0.2404 | |
| 261 | Q | A | -0.5286 | |
| 262 | Y | A | 0.0633 | |
| 263 | A | A | -0.2193 | |
| 264 | G | A | -0.7177 | |
| 265 | K | A | -1.3469 | |
| 266 | G | A | -1.6479 | |
| 267 | V | A | -0.4477 | |
| 268 | V | A | 0.4727 | |
| 269 | K | A | -1.4764 | |
| 270 | N | A | -1.8455 | |
| 271 | E | A | -2.1358 | |
| 272 | K | A | -2.9354 | |
| 273 | Q | A | -2.5067 | |
| 274 | A | A | 0.0000 | |
| 275 | V | A | -1.2020 | |
| 276 | K | A | -2.5952 | |
| 277 | T | A | 0.0000 | |
| 278 | F | A | 0.0000 | |
| 279 | E | A | -1.8531 | |
| 280 | K | A | -2.1760 | |
| 281 | A | A | 0.0000 | |
| 282 | C | A | -2.1290 | |
| 283 | R | A | -2.4709 | |
| 284 | L | A | -1.6259 | |
| 285 | G | A | -1.6853 | |
| 286 | S | A | 0.0000 | |
| 287 | E | A | -2.7104 | |
| 288 | D | A | -2.4902 | |
| 289 | A | A | 0.0000 | |
| 290 | C | A | -1.7962 | |
| 291 | G | A | -1.5106 | |
| 292 | I | A | -0.8282 | |
| 293 | L | A | -0.7838 | |
| 294 | N | A | -1.4548 | |
| 295 | N | A | -1.1116 | |
| 296 | Y | A | 0.5216 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine