| Chain sequence(s) |
A: FEFEFEGKGH
C: FEFEFEGKGH B: FEFEFEGKGH E: FEFEFEGKGH D: FEFEFEGKGH G: FEFEFEGKGH F: FEFEFEGKGH I: FEFEFEGKGH H: FEFEFEGKGH K: FEFEFEGKGH J: FEFEFEGKGH M: FEFEFEGKGH L: FEFEFEGKGH O: FEFEFEGKGH N: FEFEFEGKGH Q: FEFEFEGKGH P: FEFEFEGKGH S: FEFEFEGKGH R: FEFEFEGKGH T: FEFEFEGKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:32:56)
[INFO] Main: Simulation completed successfully. (00:33:01)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.2486 | |
| 2 | E | A | -1.3148 | |
| 3 | F | A | -1.5496 | |
| 4 | E | A | -2.1682 | |
| 5 | F | A | -1.2202 | |
| 6 | E | A | -2.0488 | |
| 7 | G | A | 0.0000 | |
| 8 | K | A | -2.7015 | |
| 9 | G | A | 0.0000 | |
| 10 | H | A | -1.6110 | |
| 1 | F | B | 1.0788 | |
| 2 | E | B | -2.2156 | |
| 3 | F | B | -1.9585 | |
| 4 | E | B | -2.9684 | |
| 5 | F | B | -1.7630 | |
| 6 | E | B | -2.5183 | |
| 7 | G | B | 0.0000 | |
| 8 | K | B | -2.6819 | |
| 9 | G | B | 0.0000 | |
| 10 | H | B | -1.4439 | |
| 1 | F | C | 1.2066 | |
| 2 | E | C | -1.5670 | |
| 3 | F | C | -2.1678 | |
| 4 | E | C | -3.3837 | |
| 5 | F | C | -2.5777 | |
| 6 | E | C | -3.8089 | |
| 7 | G | C | 0.0000 | |
| 8 | K | C | -3.4894 | |
| 9 | G | C | 0.0000 | |
| 10 | H | C | -2.0077 | |
| 1 | F | D | 0.9361 | |
| 2 | E | D | -2.2002 | |
| 3 | F | D | -2.4957 | |
| 4 | E | D | -3.8800 | |
| 5 | F | D | -2.8572 | |
| 6 | E | D | -4.1219 | |
| 7 | G | D | 0.0000 | |
| 8 | K | D | -3.4464 | |
| 9 | G | D | 0.0000 | |
| 10 | H | D | -1.6201 | |
| 1 | F | E | 1.0225 | |
| 2 | E | E | -1.3096 | |
| 3 | F | E | -1.8220 | |
| 4 | E | E | -3.3439 | |
| 5 | F | E | -2.8065 | |
| 6 | E | E | -3.9906 | |
| 7 | G | E | 0.0000 | |
| 8 | K | E | -3.5596 | |
| 9 | G | E | 0.0000 | |
| 10 | H | E | -2.0430 | |
| 1 | F | F | 0.8794 | |
| 2 | E | F | -2.1013 | |
| 3 | F | F | -2.0349 | |
| 4 | E | F | -3.1182 | |
| 5 | F | F | -2.4973 | |
| 6 | E | F | -3.7148 | |
| 7 | G | F | 0.0000 | |
| 8 | K | F | -3.2042 | |
| 9 | G | F | 0.0000 | |
| 10 | H | F | -1.3299 | |
| 1 | F | G | 1.0611 | |
| 2 | E | G | -1.8765 | |
| 3 | F | G | -1.7272 | |
| 4 | E | G | -3.0422 | |
| 5 | F | G | -2.2187 | |
| 6 | E | G | -3.6200 | |
| 7 | G | G | 0.0000 | |
| 8 | K | G | -3.0539 | |
| 9 | G | G | 0.0000 | |
| 10 | H | G | -1.7223 | |
| 1 | F | H | 1.1323 | |
| 2 | E | H | -1.8286 | |
| 3 | F | H | -1.5222 | |
| 4 | E | H | -3.0161 | |
| 5 | F | H | -1.8436 | |
| 6 | E | H | -2.8252 | |
| 7 | G | H | 0.0000 | |
| 8 | K | H | -2.5841 | |
| 9 | G | H | 0.0000 | |
| 10 | H | H | -1.4249 | |
| 1 | F | I | 1.1321 | |
| 2 | E | I | -0.9660 | |
| 3 | F | I | -0.8589 | |
| 4 | E | I | -1.8152 | |
| 5 | F | I | -1.0389 | |
| 6 | E | I | -1.5378 | |
| 7 | G | I | 0.0000 | |
| 8 | K | I | -2.1794 | |
| 9 | G | I | 0.0000 | |
| 10 | H | I | -1.0976 | |
| 1 | F | J | 1.5060 | |
| 2 | E | J | -1.0527 | |
| 3 | F | J | -0.7659 | |
| 4 | E | J | -1.6652 | |
| 5 | F | J | -0.8651 | |
| 6 | E | J | -1.2878 | |
| 7 | G | J | 0.0000 | |
| 8 | K | J | 0.0000 | |
| 9 | G | J | 0.0000 | |
| 10 | H | J | -0.8327 | |
| 1 | F | K | -0.6865 | |
| 2 | E | K | -1.5618 | |
| 3 | F | K | -0.6595 | |
| 4 | E | K | 0.0000 | |
| 5 | F | K | -0.5870 | |
| 6 | E | K | 0.0000 | |
| 7 | G | K | 0.0000 | |
| 8 | K | K | 0.0000 | |
| 9 | G | K | 0.0000 | |
| 10 | H | K | -0.7084 | |
| 1 | F | L | 0.5351 | |
| 2 | E | L | -1.7259 | |
| 3 | F | L | -0.8010 | |
| 4 | E | L | -1.4892 | |
| 5 | F | L | -0.4553 | |
| 6 | E | L | 0.0000 | |
| 7 | G | L | 0.0000 | |
| 8 | K | L | -1.5301 | |
| 9 | G | L | 0.0000 | |
| 10 | H | L | 0.0000 | |
| 1 | F | M | -0.6720 | |
| 2 | E | M | -1.9199 | |
| 3 | F | M | 0.0000 | |
| 4 | E | M | -2.0499 | |
| 5 | F | M | 0.0000 | |
| 6 | E | M | -1.6854 | |
| 7 | G | M | 0.0000 | |
| 8 | K | M | -1.7278 | |
| 9 | G | M | 0.0000 | |
| 10 | H | M | -1.6093 | |
| 1 | F | N | -1.6013 | |
| 2 | E | N | -2.1054 | |
| 3 | F | N | 0.0000 | |
| 4 | E | N | -1.9002 | |
| 5 | F | N | 0.0000 | |
| 6 | E | N | -1.7620 | |
| 7 | G | N | 0.0000 | |
| 8 | K | N | -1.9039 | |
| 9 | G | N | 0.0000 | |
| 10 | H | N | -1.4136 | |
| 1 | F | O | 0.0884 | |
| 2 | E | O | -1.2108 | |
| 3 | F | O | 0.0000 | |
| 4 | E | O | -1.4870 | |
| 5 | F | O | 0.0000 | |
| 6 | E | O | -1.9569 | |
| 7 | G | O | 0.0000 | |
| 8 | K | O | -1.9008 | |
| 9 | G | O | 0.0000 | |
| 10 | H | O | -2.3070 | |
| 1 | F | P | 0.0000 | |
| 2 | E | P | -1.8178 | |
| 3 | F | P | 0.0000 | |
| 4 | E | P | -1.7735 | |
| 5 | F | P | 0.0000 | |
| 6 | E | P | -1.3921 | |
| 7 | G | P | -0.5832 | |
| 8 | K | P | -0.8169 | |
| 9 | G | P | 0.0000 | |
| 10 | H | P | -1.3663 | |
| 1 | F | Q | 0.9855 | |
| 2 | E | Q | -1.4651 | |
| 3 | F | Q | -0.5666 | |
| 4 | E | Q | -0.9795 | |
| 5 | F | Q | -0.3252 | |
| 6 | E | Q | 0.0000 | |
| 7 | G | Q | 0.0000 | |
| 8 | K | Q | -1.9765 | |
| 9 | G | Q | 0.0000 | |
| 10 | H | Q | -0.8664 | |
| 1 | F | R | 1.1347 | |
| 2 | E | R | -0.7381 | |
| 3 | F | R | -0.9215 | |
| 4 | E | R | 0.0000 | |
| 5 | F | R | -0.6984 | |
| 6 | E | R | 0.0000 | |
| 7 | G | R | 0.0000 | |
| 8 | K | R | -1.0968 | |
| 9 | G | R | 0.0000 | |
| 10 | H | R | -1.2139 | |
| 1 | F | S | 1.1368 | |
| 2 | E | S | -1.4175 | |
| 3 | F | S | -1.1429 | |
| 4 | E | S | -1.3558 | |
| 5 | F | S | -0.1964 | |
| 6 | E | S | -0.8279 | |
| 7 | G | S | 0.0000 | |
| 8 | K | S | -1.3947 | |
| 9 | G | S | 0.0000 | |
| 10 | H | S | -0.9915 | |
| 1 | F | T | 1.5585 | |
| 2 | E | T | -1.0833 | |
| 3 | F | T | -0.8514 | |
| 4 | E | T | -1.9641 | |
| 5 | F | T | -0.6886 | |
| 6 | E | T | -0.9798 | |
| 7 | G | T | 0.0000 | |
| 8 | K | T | -1.9212 | |
| 9 | G | T | 0.0000 | |
| 10 | H | T | -1.4135 |