Project name: Bevacizumab

Status: done

Started: 2026-04-12 04:33:37
Settings
Chain sequence(s) H: EVQLVESGGGLVQPGGSLRLSCAASGYTFTNYGMNWVRQAPGKGLEWVGWINTYTGEPTYAADFKRRFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPHYYGSSHWYFDVWGQGTLVT
L: DIQMTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSSLHSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:20)
Show buried residues

Minimal score value
-3.3296
Maximal score value
1.4584
Average score
-0.532
Total score value
-120.7544

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9231
2 V H -0.8625
3 Q H -0.9343
4 L H 0.0000
5 V H 1.1596
6 E H 0.0000
7 S H -0.2005
8 G H -0.4954
9 G H 0.0602
11 G H 0.6531
12 L H 1.2474
13 V H 0.0000
14 Q H -1.4424
15 P H -1.9787
16 G H -1.6877
17 G H -1.3993
18 S H -1.4788
19 L H -0.9498
20 R H -1.7121
21 L H 0.0000
22 S H -0.1769
23 C H 0.0000
24 A H 0.0953
25 A H 0.0000
26 S H -0.7574
27 G H -1.0527
28 Y H -0.5540
29 T H -0.3872
30 F H 0.0000
35 T H -0.1153
36 N H -0.9523
37 Y H -0.3205
38 G H -0.2413
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6750
45 A H 0.0000
46 P H -0.8314
47 G H -1.4779
48 K H -2.3236
49 G H -1.5463
50 L H 0.0000
51 E H -1.0203
52 W H 0.0000
53 V H 0.0000
54 G H 0.0000
55 W H -0.0897
56 I H 0.0000
57 N H -0.6126
58 T H 0.0000
59 Y H 0.6278
62 T H -0.1265
63 G H -0.7776
64 E H -1.7945
65 P H -1.0067
66 T H -0.4715
67 Y H -0.6655
68 A H 0.0000
69 A H -1.6398
70 D H -2.6867
71 F H 0.0000
72 K H -3.1410
74 R H -3.3296
75 R H -2.4598
76 F H 0.0000
77 T H -1.1694
78 F H 0.0000
79 S H -0.3751
80 L H -0.2374
81 D H -0.8287
82 T H -0.6609
83 S H -1.1351
84 K H -1.9256
85 S H -1.0127
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2858
89 L H 0.0000
90 Q H -1.2987
91 M H 0.0000
92 N H -2.2053
93 S H -1.8012
94 L H 0.0000
95 R H -3.0506
96 A H -1.9946
97 E H -2.4603
98 D H 0.0000
99 T H -0.5308
100 A H 0.0000
101 V H 0.5913
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 K H 0.0000
107 Y H 0.0000
108 P H 0.0000
109 H H 0.0584
110 Y H 1.3803
111 Y H 1.4584
111A G H 0.3592
112B S H 0.2342
112A S H 0.3756
112 H H 0.5382
113 W H 0.4887
114 Y H 0.0000
115 F H 0.0000
116 D H -0.3956
117 V H -0.0952
118 W H 0.0000
119 G H 0.0000
120 Q H -1.2948
121 G H -0.3891
122 T H 0.0000
123 L H 1.4317
124 V H 0.0000
125 T H 0.1429
1 D L -2.0166
2 I L 0.0000
3 Q L -1.9684
4 M L 0.0000
5 T L -0.8891
6 Q L 0.0000
7 S L -0.4509
8 P L -0.6001
9 S L -0.9622
10 S L -1.1475
11 L L -0.8432
12 S L -0.8930
13 A L -1.0109
14 S L -0.8140
15 V L -0.0430
16 G L -0.7547
17 D L -1.7222
18 R L -2.2744
19 V L 0.0000
20 T L -0.6159
21 I L 0.0000
22 T L -0.5860
23 C L 0.0000
24 S L -1.5093
25 A L 0.0000
26 S L -1.9093
27 Q L -2.5288
28 D L -2.6465
29 I L 0.0000
36 S L -1.0253
37 N L -0.4352
38 Y L 0.5524
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.6843
44 Q L 0.0000
45 K L -1.4740
46 P L -1.1026
47 G L -1.6341
48 K L -2.5291
49 A L -1.4928
50 P L 0.0000
51 K L -1.0981
52 V L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.7078
56 F L 0.8636
57 T L 0.0000
65 S L 0.0445
66 S L 0.2685
67 L L 0.3709
68 H L -0.1982
69 S L -0.3669
70 G L -0.5002
71 V L -0.2707
72 P L -0.3472
74 S L -0.4074
75 R L -0.6894
76 F L 0.0000
77 S L -0.3249
78 G L 0.0000
79 S L -0.6900
80 G L -1.0706
83 S L -1.2209
84 G L -1.7530
85 T L -2.1108
86 D L -2.4804
87 F L 0.0000
88 T L -0.6563
89 L L 0.0000
90 T L -0.5915
91 I L 0.0000
92 S L -1.2420
93 S L -1.1128
94 L L 0.0000
95 Q L -0.7883
96 P L -0.9082
97 E L -1.5866
98 D L 0.0000
99 F L -0.1072
100 A L 0.0000
101 T L -0.9885
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 S L -0.0473
109 T L 0.1540
114 V L 0.6331
115 P L 0.0851
116 W L 0.0000
117 T L -0.6889
118 F L 0.0000
119 G L 0.0000
120 Q L -1.6077
121 G L 0.0000
122 T L 0.0000
123 K L -1.9711
124 V L 0.0000
125 E L -1.2322
126 I L -0.6953
127 K L -1.5755
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018