Project name: query_structure

Status: done

Started: 2025-11-29 10:37:02
Settings
Chain sequence(s) A: GLPCGESCVFIPCITTVVGCSCKNKVCYND
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:20)
Show buried residues

Minimal score value
-2.3482
Maximal score value
2.9816
Average score
0.3681
Total score value
11.0443

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.7564
2 L A 0.7209
3 P A -0.0119
4 C A 0.2853
5 G A -0.3763
6 E A 0.0590
7 S A 0.2834
8 C A 1.0019
9 V A 1.7396
10 F A 2.9816
11 I A 2.9747
12 P A 1.6545
13 C A 0.0000
14 I A 2.7517
15 T A 1.9516
16 T A 1.8665
17 V A 2.9279
18 V A 2.4615
19 G A 0.7002
20 C A 0.0000
21 S A -0.4804
22 C A -0.7421
23 K A -2.2720
24 N A -2.3482
25 K A -1.6709
26 V A -0.9682
27 C A 0.0000
28 Y A -0.8129
29 N A -1.0429
30 D A -1.8338
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Laboratory of Theory of Biopolymers 2018