Project name: ecd_575_1st

Status: done

Started: 2024-06-13 13:52:24
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVKLVKMLEKIMLASGCTLEESKIKEVKKKPKYIDLALKAQFEIMPKTALELAKVFRLKNIEALAILVCGCSPTGNLSNLYSLQMKGDLNLSYVMTTCSTLCARENMVDLLEKYSRGIYDGDLKDKVPYKGIEISLKLVTKPCTEGIELKSKRPQLLRKELKKLKEEIEKLTKEVTELSKENVGKSIMFAMTPKILKTSSLMPRLGFEKGLELSEKACLNGRCRRTVSMETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMQEQLKEGEERVKKLKEEEKKKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:22)
Show buried residues

Minimal score value
-5.4084
Maximal score value
2.3689
Average score
-1.1411
Total score value
-344.6158

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.4208
2 F A 1.1060
3 T A 0.5839
4 L A 0.2325
5 P A -0.2227
6 P A -1.0662
7 N A -2.2005
8 F A 0.0000
9 G A -1.3121
10 K A -2.3074
11 R A -1.5592
12 P A -0.7633
13 T A -0.7230
14 D A -0.7196
15 L A 0.6236
16 E A -0.4075
17 L A 0.0000
18 S A 0.7666
19 V A 1.4032
20 K A -0.0082
21 L A 0.0000
22 V A 0.2552
23 K A -0.7007
24 M A -0.8996
25 L A 0.0000
26 E A -1.2343
27 K A -1.2007
28 I A -0.5011
29 M A 0.0000
30 L A -0.9056
31 A A 0.0000
32 S A 0.0000
33 G A 0.0000
34 C A 0.0000
35 T A -0.4566
36 L A 0.0000
37 E A -2.2979
38 E A -2.3007
39 S A -1.8173
40 K A -2.2972
41 I A -2.0004
42 K A -3.3066
43 E A -3.1182
44 V A 0.0000
45 K A -3.3974
46 K A -3.5607
47 K A -2.9868
48 P A -2.3045
49 K A -2.1226
50 Y A -1.5791
51 I A -1.4325
52 D A -2.1209
53 L A 0.0000
54 A A 0.0000
55 L A -0.6056
56 K A -1.3324
57 A A 0.0000
58 Q A 0.0000
59 F A -0.8278
60 E A -2.0029
61 I A -1.2409
62 M A 0.0000
63 P A 0.0000
64 K A -2.5082
65 T A 0.0000
66 A A 0.0000
67 L A -1.3994
68 E A -2.4297
69 L A 0.0000
70 A A 0.0000
71 K A -2.0817
72 V A 0.0927
73 F A -1.0524
74 R A -2.4910
75 L A -1.8700
76 K A -2.5985
77 N A -2.1253
78 I A -0.4967
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 T A 0.0000
92 G A 0.0000
93 N A -0.3141
94 L A 0.4302
95 S A 0.0000
96 N A 0.5336
97 L A 1.2480
98 Y A 0.0000
99 S A 0.0000
100 L A 0.8249
101 Q A -0.4852
102 M A 0.0000
103 K A -1.8666
104 G A 0.0000
105 D A -1.4417
106 L A -0.1967
107 N A -0.8706
108 L A 0.0000
109 S A 0.0000
110 Y A -0.2429
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A 0.0000
115 C A 0.0000
116 S A 0.0000
117 T A 0.0493
118 L A 0.4390
119 C A -0.3505
120 A A 0.0000
121 R A -2.7134
122 E A -3.0669
123 N A -2.2475
124 M A 0.0000
125 V A -2.2600
126 D A -2.7760
127 L A 0.0000
128 L A 0.0000
129 E A -2.9765
130 K A -2.7271
131 Y A 0.0000
132 S A 0.0000
133 R A -3.1381
134 G A -2.1456
135 I A -1.3248
136 Y A -1.9595
137 D A -2.7579
138 G A -2.6698
139 D A -3.5886
140 L A 0.0000
141 K A -3.6505
142 D A -3.2894
143 K A -2.3057
144 V A 0.0000
145 P A -1.5016
146 Y A -1.8667
147 K A -2.0565
148 G A -0.9868
149 I A 0.0000
150 E A -2.2107
151 I A -0.4876
152 S A 0.0000
153 L A 0.0000
154 K A -1.9087
155 L A -0.8219
156 V A 0.0000
157 T A -1.5763
158 K A -2.4621
159 P A -1.9133
160 C A 0.0000
161 T A -1.8903
162 E A -2.8303
163 G A 0.0000
164 I A -2.1039
165 E A -3.4284
166 L A -2.4634
167 K A -2.7759
168 S A -2.8133
169 K A -3.0642
170 R A -2.9440
171 P A -2.4437
172 Q A -2.2713
173 L A -1.4996
174 L A 0.0000
175 R A -3.4392
176 K A -3.6473
177 E A -3.1723
178 L A -3.1467
179 K A -4.7193
180 K A -4.8703
181 L A 0.0000
182 K A -4.6192
183 E A -5.0365
184 E A -4.0443
185 I A -3.6238
186 E A -4.4945
187 K A -4.1323
188 L A 0.0000
189 T A -2.5912
190 K A -3.1734
191 E A -2.4085
192 V A 0.0000
193 T A -2.0112
194 E A -2.8889
195 L A -2.3425
196 S A -2.0047
197 K A -3.2719
198 E A -3.2416
199 N A 0.0000
200 V A 0.0000
201 G A -2.1354
202 K A -1.4622
203 S A 0.3694
204 I A 0.8458
205 M A 1.5501
206 F A 2.3689
207 A A 0.0000
208 M A 0.0000
209 T A 0.3592
210 P A -0.3902
211 K A -1.1154
212 I A 0.0000
213 L A -0.0508
214 K A -1.2319
215 T A 0.0000
216 S A 0.0000
217 S A -0.4919
218 L A -0.0390
219 M A 0.0000
220 P A 0.0000
221 R A -0.8819
222 L A -0.4262
223 G A 0.0000
224 F A 0.0000
225 E A -2.3576
226 K A -2.0220
227 G A 0.0000
228 L A -2.1801
229 E A -3.3220
230 L A 0.0000
231 S A 0.0000
232 E A -3.0811
233 K A -2.6262
234 A A -1.5704
235 C A -0.9019
236 L A -1.3956
237 N A -2.2000
238 G A -2.3050
239 R A -2.9682
240 C A 0.0000
241 R A -2.2753
242 R A -1.6347
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 M A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.0751
255 L A 0.0000
256 C A 0.0000
257 S A 0.0000
258 T A 0.0000
259 I A 0.0000
260 L A 0.0000
261 N A 0.2392
262 V A 0.8773
263 A A -0.1629
264 F A 0.0000
265 P A -0.0652
266 P A -0.6406
267 E A -0.9096
268 V A 0.8298
269 I A 0.0000
270 G A 0.0000
271 P A 0.0000
272 L A 0.0000
273 F A 0.0000
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A 0.9097
278 L A 0.7015
279 Y A 0.0000
280 M A 0.0312
281 Q A -0.8768
282 E A -0.8350
283 Q A 0.0000
284 L A -1.0089
285 K A -2.4248
286 E A -2.1450
287 G A 0.0000
288 E A -3.1461
289 E A -3.9294
290 R A -3.2136
291 V A 0.0000
292 K A -4.5500
293 K A -4.5567
294 L A -3.7873
295 K A -4.4536
296 E A -5.4084
297 E A -5.3095
298 E A -4.7084
299 K A -5.2262
300 K A -5.1656
301 K A -4.7014
302 E A -4.0414
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Laboratory of Theory of Biopolymers 2018