| Chain sequence(s) |
A: RSFMLTVGLVSWSYYR
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | SD11A,TE6A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.328549 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:05)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:09)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:13)
[INFO] Main: Simulation completed successfully. (00:00:14)
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:00:12)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:25)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:35)
[INFO] Main: Simulation completed successfully. (00:00:35)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -1.1169 | |
| 2 | S | A | 0.5939 | |
| 3 | F | A | 2.2443 | |
| 4 | M | A | 2.5147 | |
| 5 | L | A | 2.5852 | |
| 6 | E | A | 1.0694 | mutated: TE6A |
| 7 | V | A | 1.5109 | |
| 8 | G | A | 0.7825 | |
| 9 | L | A | 1.6028 | |
| 10 | V | A | 1.0897 | |
| 11 | D | A | -0.0503 | mutated: SD11A |
| 12 | W | A | 1.2782 | |
| 13 | S | A | 1.9896 | |
| 14 | Y | A | 2.7300 | |
| 15 | Y | A | 2.4874 |