Project name: query_structure

Status: done

Started: 2026-03-16 23:20:33
Settings
Chain sequence(s) A: GFPTCGETCTLGTCNTPGCTCSWPICTRD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:17)
Show buried residues

Minimal score value
-2.5492
Maximal score value
1.5942
Average score
-0.183
Total score value
-5.307

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.3975
2 F A 1.0687
3 P A -0.5178
4 T A -0.3899
5 C A -0.8389
6 G A -0.7491
7 E A -0.6356
8 T A 0.2568
9 C A 0.0000
10 T A 0.9541
11 L A 1.5483
12 G A 0.6673
13 T A 0.2061
14 C A -0.3562
15 N A -1.3503
16 T A -1.1882
17 P A -0.9857
18 G A -1.5065
19 C A -1.4787
20 T A -0.5396
21 C A 0.8186
22 S A 0.7604
23 W A 1.5942
24 P A 1.0797
25 I A 0.9087
26 C A 0.0000
27 T A 0.0000
28 R A -2.4817
29 D A -2.5492
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Laboratory of Theory of Biopolymers 2018