Project name: query_structure

Status: done

Started: 2026-03-16 23:01:04
Settings
Chain sequence(s) A: CMPNQFKCRSSRTCLLPGWVCDGIDDCPDGSDESPANCPTPT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:20)
Show buried residues

Minimal score value
-3.0229
Maximal score value
0.875
Average score
-0.7752
Total score value
-32.5567

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 0.4652
2 M A 0.7638
3 P A -0.3808
4 N A -0.9653
5 Q A -0.1974
6 F A -0.6573
7 K A -1.9346
8 C A 0.0000
9 R A -3.0229
10 S A -2.3067
11 S A -2.2591
12 R A -2.3823
13 T A -1.3743
14 C A -0.4443
15 L A 0.0000
16 L A 0.8750
17 P A -0.1895
18 G A -0.1071
19 W A 0.2118
20 V A -0.1814
21 C A -0.5777
22 D A -1.5240
23 G A -0.8802
24 I A -0.2189
25 D A -2.0784
26 D A -1.3924
27 C A 0.0000
28 P A -1.9940
29 D A -2.8857
30 G A -2.0360
31 S A 0.0000
32 D A 0.0000
33 E A -1.1580
34 S A -0.8391
35 P A -0.4164
36 A A -0.3282
37 N A -0.2908
38 C A -0.4695
39 P A -0.4329
40 T A -0.3148
41 P A -0.3800
42 T A -0.2525
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018