| Chain sequence(s) |
A: QVQLVQSGAEVKKPGSSVKVSCKASGYTFSSNVISWVRQAPGQGLEWMGGVIPIVDIANYAQRFKGRVTITADESTSTTYMELSSLRSEDTAVYYCASTLGLVLDAMDYWGQGTLVTVSSGGGGSGGGGSGGGGSALETVLTQSPGTLSLSPGERATLSCRASQSLGSSYLAWYQQKPGQAPRLLIYGASSRAPGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYADSPITFGQGTRLEIK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:00)
[INFO] Main: Simulation completed successfully. (00:02:01)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | Q | A | -1.5053 | |
| 3 | V | A | -0.9161 | |
| 4 | Q | A | -1.3087 | |
| 5 | L | A | 0.0000 | |
| 6 | V | A | 0.1339 | |
| 7 | Q | A | 0.0000 | |
| 8 | S | A | -0.3420 | |
| 9 | G | A | -0.9250 | |
| 10 | A | A | -0.3178 | |
| 11 | E | A | -0.5561 | |
| 12 | V | A | 0.6365 | |
| 13 | K | A | -1.2475 | |
| 14 | K | A | -2.1803 | |
| 15 | P | A | -1.8296 | |
| 16 | G | A | -1.4327 | |
| 17 | S | A | -1.2601 | |
| 18 | S | A | -1.3789 | |
| 19 | V | A | 0.0000 | |
| 20 | K | A | -2.0838 | |
| 21 | V | A | 0.0000 | |
| 22 | S | A | -0.5959 | |
| 23 | C | A | 0.0000 | |
| 24 | K | A | -1.0078 | |
| 25 | A | A | 0.0000 | |
| 26 | S | A | -0.9874 | |
| 27 | G | A | -1.0329 | |
| 28 | Y | A | -0.4120 | |
| 29 | T | A | -0.4108 | |
| 30 | F | A | 0.0000 | |
| 31 | S | A | -0.2201 | |
| 32 | S | A | -0.1253 | |
| 33 | N | A | 0.2525 | |
| 34 | V | A | 0.7177 | |
| 35 | I | A | 0.0000 | |
| 36 | S | A | 0.0000 | |
| 37 | W | A | 0.0000 | |
| 38 | V | A | 0.0000 | |
| 39 | R | A | 0.0000 | |
| 40 | Q | A | -0.4369 | |
| 41 | A | A | -0.5811 | |
| 42 | P | A | -0.8475 | |
| 43 | G | A | -1.2236 | |
| 44 | Q | A | -1.8849 | |
| 45 | G | A | -1.3254 | |
| 46 | L | A | 0.0000 | |
| 47 | E | A | -0.7952 | |
| 48 | W | A | 0.0000 | |
| 49 | M | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | G | A | 0.0000 | |
| 52 | V | A | 0.0000 | |
| 53 | I | A | 1.1685 | |
| 54 | P | A | 0.8100 | |
| 55 | I | A | 1.7578 | |
| 56 | V | A | 1.0755 | |
| 57 | D | A | 0.1572 | |
| 58 | I | A | 1.6354 | |
| 59 | A | A | 0.4942 | |
| 60 | N | A | -0.5900 | |
| 61 | Y | A | -1.1781 | |
| 62 | A | A | 0.0000 | |
| 63 | Q | A | -2.2791 | |
| 64 | R | A | -1.9080 | |
| 65 | F | A | 0.0000 | |
| 66 | K | A | -2.6354 | |
| 67 | G | A | -1.6653 | |
| 68 | R | A | -1.4549 | |
| 69 | V | A | 0.0000 | |
| 70 | T | A | -0.9745 | |
| 71 | I | A | 0.0000 | |
| 72 | T | A | -0.2226 | |
| 73 | A | A | -0.4359 | |
| 74 | D | A | -1.3780 | |
| 75 | E | A | -1.9345 | |
| 76 | S | A | -1.3506 | |
| 77 | T | A | -1.1635 | |
| 78 | S | A | -1.3497 | |
| 79 | T | A | 0.0000 | |
| 80 | T | A | 0.0000 | |
| 81 | Y | A | -0.6083 | |
| 82 | M | A | 0.0000 | |
| 83 | E | A | -1.5579 | |
| 84 | L | A | 0.0000 | |
| 85 | S | A | -1.0919 | |
| 86 | S | A | -1.0381 | |
| 87 | L | A | 0.0000 | |
| 88 | R | A | -1.9927 | |
| 89 | S | A | -1.5604 | |
| 90 | E | A | -1.1121 | |
| 91 | D | A | 0.0000 | |
| 92 | T | A | -0.0772 | |
| 93 | A | A | 0.0000 | |
| 94 | V | A | 0.8268 | |
| 95 | Y | A | 0.0000 | |
| 96 | Y | A | 0.0000 | |
| 97 | C | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | S | A | 0.0000 | |
| 100 | T | A | 0.0000 | |
| 101 | L | A | 0.6440 | |
| 102 | G | A | 0.5292 | |
| 103 | L | A | 1.6049 | |
| 104 | V | A | 1.2079 | |
| 105 | L | A | 1.0331 | |
| 106 | D | A | 0.4880 | |
| 107 | A | A | 0.0000 | |
| 108 | M | A | 0.0000 | |
| 109 | D | A | -0.1021 | |
| 110 | Y | A | 0.2335 | |
| 111 | W | A | -0.2290 | |
| 112 | G | A | 0.0000 | |
| 113 | Q | A | -1.2257 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | 0.4655 | |
| 116 | L | A | 1.5578 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | 0.0852 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -1.1578 | |
| 121 | S | A | -1.4083 | |
| 122 | G | A | -1.3159 | |
| 123 | G | A | -1.0938 | |
| 124 | G | A | -1.1522 | |
| 125 | G | A | -1.1626 | |
| 126 | S | A | -1.0134 | |
| 127 | G | A | -1.1611 | |
| 128 | G | A | -1.4245 | |
| 129 | G | A | -1.4090 | |
| 130 | G | A | -1.3222 | |
| 131 | S | A | -1.0477 | |
| 132 | G | A | -1.2479 | |
| 133 | G | A | -1.2169 | |
| 134 | G | A | -1.0967 | |
| 135 | G | A | -1.1325 | |
| 136 | S | A | -0.6204 | |
| 137 | A | A | 0.2425 | |
| 138 | L | A | 1.1243 | |
| 139 | E | A | -0.4849 | |
| 140 | T | A | 0.0000 | |
| 141 | V | A | 0.8716 | |
| 142 | L | A | 0.0000 | |
| 143 | T | A | -0.7846 | |
| 144 | Q | A | 0.0000 | |
| 145 | S | A | -0.8817 | |
| 146 | P | A | -0.5032 | |
| 147 | G | A | -0.8531 | |
| 148 | T | A | -0.5757 | |
| 149 | L | A | -0.2197 | |
| 150 | S | A | -0.3460 | |
| 151 | L | A | -0.6118 | |
| 152 | S | A | -1.1209 | |
| 153 | P | A | -1.7139 | |
| 154 | G | A | -2.3471 | |
| 155 | E | A | -2.7007 | |
| 156 | R | A | -3.0314 | |
| 157 | A | A | 0.0000 | |
| 158 | T | A | -0.6077 | |
| 159 | L | A | 0.0000 | |
| 160 | S | A | -0.9238 | |
| 161 | C | A | 0.0000 | |
| 162 | R | A | -2.3419 | |
| 163 | A | A | 0.0000 | |
| 164 | S | A | -0.9723 | |
| 165 | Q | A | -1.6532 | |
| 166 | S | A | -1.3549 | |
| 167 | L | A | 0.0000 | |
| 168 | G | A | -0.6359 | |
| 169 | S | A | -0.3636 | |
| 170 | S | A | 0.1655 | |
| 171 | Y | A | 0.4325 | |
| 172 | L | A | 0.0000 | |
| 173 | A | A | 0.0000 | |
| 174 | W | A | 0.0000 | |
| 175 | Y | A | 0.0000 | |
| 176 | Q | A | 0.0000 | |
| 177 | Q | A | 0.0000 | |
| 178 | K | A | -1.3352 | |
| 179 | P | A | -0.9378 | |
| 180 | G | A | -1.4014 | |
| 181 | Q | A | -2.0584 | |
| 182 | A | A | -1.3396 | |
| 183 | P | A | 0.0000 | |
| 184 | R | A | -1.5079 | |
| 185 | L | A | 0.0000 | |
| 186 | L | A | 0.0000 | |
| 187 | I | A | 0.0000 | |
| 188 | Y | A | -0.0765 | |
| 189 | G | A | -0.1581 | |
| 190 | A | A | 0.0000 | |
| 191 | S | A | -0.7628 | |
| 192 | S | A | -0.8473 | |
| 193 | R | A | -1.7924 | |
| 194 | A | A | 0.0000 | |
| 195 | P | A | -0.8447 | |
| 196 | G | A | -1.0215 | |
| 197 | I | A | 0.0000 | |
| 198 | P | A | -1.3912 | |
| 199 | D | A | -2.4318 | |
| 200 | R | A | -2.0142 | |
| 201 | F | A | 0.0000 | |
| 202 | S | A | -0.9627 | |
| 203 | G | A | 0.0000 | |
| 204 | S | A | -0.6855 | |
| 205 | G | A | -1.1276 | |
| 206 | S | A | -1.1109 | |
| 207 | G | A | -1.2342 | |
| 208 | T | A | -1.7355 | |
| 209 | D | A | -2.1477 | |
| 210 | F | A | 0.0000 | |
| 211 | T | A | -0.7800 | |
| 212 | L | A | 0.0000 | |
| 213 | T | A | -0.7810 | |
| 214 | I | A | 0.0000 | |
| 215 | S | A | -2.3949 | |
| 216 | R | A | -3.4830 | |
| 217 | L | A | 0.0000 | |
| 218 | E | A | -2.4830 | |
| 219 | P | A | -1.5276 | |
| 220 | E | A | -2.3377 | |
| 221 | D | A | 0.0000 | |
| 222 | F | A | 0.0000 | |
| 223 | A | A | 0.0000 | |
| 224 | V | A | -0.2291 | |
| 225 | Y | A | 0.0000 | |
| 226 | Y | A | 0.0000 | |
| 227 | C | A | 0.0000 | |
| 228 | Q | A | 0.0000 | |
| 229 | Q | A | 0.0000 | |
| 230 | Y | A | -0.0819 | |
| 231 | A | A | -0.6617 | |
| 232 | D | A | -1.9182 | |
| 233 | S | A | -1.1605 | |
| 234 | P | A | -0.9247 | |
| 235 | I | A | 0.0000 | |
| 236 | T | A | 0.0000 | |
| 237 | F | A | 0.0899 | |
| 238 | G | A | 0.0000 | |
| 239 | Q | A | -1.3874 | |
| 240 | G | A | 0.0000 | |
| 241 | T | A | 0.0000 | |
| 242 | R | A | -0.8341 | |
| 243 | L | A | 0.0000 | |
| 244 | E | A | -0.3751 | |
| 245 | I | A | 0.7090 | |
| 246 | K | A | -0.9407 |