Project name: 08_rank

Status: done

Started: 2026-04-28 14:22:42
Settings
Chain sequence(s) B: MSEAEKLVEEAKPYFEQAVNMPGVNFSVFWFYFDDYWEYVEKLLRRPLPKETQRALWSLGFEYQEQFRKKQGM
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:09)
Show buried residues

Minimal score value
-4.1389
Maximal score value
1.2702
Average score
-1.4428
Total score value
-105.3217

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M B -0.1931
2 S B -1.6194
3 E B -3.0801
4 A B 0.0000
5 E B -3.5486
6 K B -3.8123
7 L B 0.0000
8 V B -2.6210
9 E B -3.8332
10 E B -3.0678
11 A B 0.0000
12 K B -2.3093
13 P B -1.8320
14 Y B -1.1626
15 F B 0.0000
16 E B -2.3016
17 Q B -2.1478
18 A B 0.0000
19 V B 0.0000
20 N B -2.2327
21 M B -1.1174
22 P B -1.0139
23 G B -0.9053
24 V B 0.0000
25 N B -0.7103
26 F B 0.1426
27 S B 0.7073
28 V B 1.0368
29 F B 0.0000
30 W B 0.8627
31 F B 1.2702
32 Y B 0.3872
33 F B 0.0000
34 D B -1.8517
35 D B -2.0907
36 Y B 0.0000
37 W B -1.7903
38 E B -2.8311
39 Y B -1.6219
40 V B 0.0000
41 E B -2.4442
42 K B -2.7555
43 L B -1.0923
44 L B -1.6568
45 R B -2.8921
46 R B -2.7279
47 P B -2.1314
48 L B 0.0000
49 P B -2.1141
50 K B -3.3007
51 E B -3.8358
52 T B 0.0000
53 Q B -2.4706
54 R B -3.0046
55 A B -1.9711
56 L B 0.0000
57 W B -0.2222
58 S B -0.4801
59 L B 0.0000
60 G B 0.0000
61 F B 0.1932
62 E B -1.8033
63 Y B 0.0000
64 Q B -2.1394
65 E B -3.6551
66 Q B -3.6838
67 F B 0.0000
68 R B -3.9934
69 K B -4.1389
70 K B -3.9337
71 Q B -2.9411
72 G B -1.8547
73 M B -0.9848
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Laboratory of Theory of Biopolymers 2018