Project name: 10A_distance

Status: done

Started: 2024-06-13 18:43:14
Settings
Chain sequence(s) B: GTNLSVPNPLGFFPDHQLDPAFKANSENPDWDLNPHKDNWPDANKVG
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:07)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:07)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:07)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:07)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:07)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:23)
Show buried residues

Minimal score value
-3.3732
Maximal score value
2.684
Average score
-0.8443
Total score value
-39.6802

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 G B -0.6034
3 T B -0.5465
4 N B -0.8217
5 L B 0.8187
6 S B 0.2742
7 V B 1.0584
8 P B 0.6995
9 N B 0.5130
10 P B 0.6548
11 L B 1.7110
12 G B 1.5669
13 F B 2.6840
14 F B 2.3193
15 P B 0.3370
16 D B -0.7260
17 H B 0.3756
18 Q B 0.0000
19 L B 0.9338
20 D B -0.0704
21 P B 0.0073
22 A B 0.0908
23 F B 0.3487
24 K B -2.4956
25 A B -2.4976
26 N B -2.3426
27 S B -2.6008
28 E B -3.3399
29 N B -3.3234
30 P B -2.8296
31 D B -2.5712
32 W B -1.0369
33 D B -1.0061
34 L B -0.6092
35 N B -1.7199
36 P B -1.6724
37 H B -2.6072
38 K B -3.3732
39 D B -3.2130
40 N B -2.4147
41 W B -1.0919
42 P B -1.6283
43 D B -2.4677
44 A B -1.7826
45 N B -2.1428
46 K B -2.2198
47 V B 0.1407
48 G B -0.4595
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Laboratory of Theory of Biopolymers 2018