Project name: 4fduAB-1

Status: done

Started: 2026-05-29 07:45:18
Settings
Chain sequence(s) A: HMQTKIQKYAGTAMPYPNRTMTPFYINHLGRHGARFPTSRKALDKVEKVLVSAQQENGLTSEGMALLSMIRRLSRLFDGQWGKKLSKLGETTEQEGIAGRMIIRRNYPQLFSNSAKIEAIATYVPRSINSMDAFLSCMMIRHNPALQVQRSEGKQYNHHILRFFDLNKSYVNYKEKGDWLPIYKAFVHKKISPVPIMKKFLLNPEEQYLDKEAEEFVMALFSVAAILPDTSIPLNLEDLFTLDEWHRYWQTQNLRQYMSKSSAPVGKMLPVAIAWPLLSEFIRSAQEVISGKSDYQANFRFAHAETVIPFVSLMGIEKTDVQVCCRPDSVSVYWKDYEISPMAANVQWLFYRDRDQRIWVKILLNEEAAALPISTACFPYYSSWEKTRIFFNQRIEMAKKTLSVFN
B: QTKIQKYAGTAMPYPNRTMTPFYINHLGRHGARFPTSRKALDKVEKVLVSAQQENGLTSEGMMALLSMIRRLSRLFDGQWGKLSKLGETEQEGIAGRMIRNYPQLFSNSAKIEAIATYVPRSINSMDAFLSCMIRHNPALQVQQRSSEGKQYNHILRFFDLNKSYVNYKEKGDWLPIYKAFVHHKKISPVPIMKKFLLNPEQYLDKEAEEFVMALFSVAAILPDTSIPLNLEDLFTLDEWHRYWQTQNLRQYMSKSSAPVGKMLPVAIAWPLLSEFIRSAQEVISGKSDYQANFRFAHAETVIPFVSLMGIEKTDVQVCRPDSVSVYWKDYEISPMAANVQWLFYRDRDQRIWVKILLNEEAAALPISTACFPYYSWEKTRIFFNQRIEMAKKTLSVFN
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:26:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:26:32)
Show buried residues

Minimal score value
-4.1656
Maximal score value
1.7286
Average score
-0.8208
Total score value
-650.037

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
19 H A -1.2406
20 M A -0.6580
21 Q A -1.5147
22 T A -1.3414
23 K A -1.5558
24 I A -1.3447
25 Q A -0.9713
26 K A -1.3598
27 Y A 0.0000
28 A A -0.4275
29 G A 0.0000
30 T A -0.4246
31 A A -0.1565
32 M A 0.0000
33 P A -0.3001
34 Y A 0.0000
35 P A -1.1540
36 N A -1.5537
37 R A -1.4673
38 T A -0.7123
48 M A 0.6246
49 T A -0.0605
50 P A 0.0000
51 F A 0.2360
52 Y A 0.0000
53 I A 0.0000
54 N A 0.0000
55 H A 0.0000
56 L A 0.0000
57 G A 0.0000
58 R A 0.0000
59 H A 0.0000
60 G A 0.0000
61 A A 0.0000
62 R A -1.0438
63 F A 0.0000
64 P A -0.8179
65 T A -0.8910
66 S A -1.3541
67 R A -2.7402
68 K A -2.8091
69 A A -2.0852
70 L A 0.0000
71 D A -2.5265
72 K A -2.6350
73 V A 0.0000
74 E A -2.0390
75 K A -2.1196
76 V A -1.3221
77 L A 0.0000
78 V A -1.2783
79 S A -1.5437
80 A A 0.0000
81 Q A -1.9936
82 Q A -2.7026
83 E A -3.1623
84 N A -2.5270
85 G A -1.3494
86 L A -0.9583
87 T A -0.7334
88 S A -0.4950
89 E A -1.3405
90 G A 0.0000
91 M A 0.2709
92 A A -0.0595
93 L A 0.0000
94 L A 0.0000
95 S A -0.8957
96 M A -1.3210
97 I A 0.0000
98 R A -3.0294
99 R A -3.0382
100 L A 0.0000
101 S A -2.8007
102 R A -3.2794
103 L A -1.7085
104 F A 0.0000
105 D A -2.9205
106 G A -1.8393
107 Q A -1.6782
108 W A -1.2165
109 G A 0.0000
110 K A -1.9507
111 L A -1.4345
112 S A 0.0000
113 K A -2.0278
114 L A -0.9140
115 G A 0.0000
116 E A -1.8505
117 T A -1.1040
118 E A 0.0000
119 Q A 0.0000
120 E A -1.1684
121 G A -0.9019
122 I A 0.0000
123 A A 0.0000
124 G A 0.0000
125 R A -1.4906
126 M A 0.0000
127 I A -1.5265
128 R A -2.6936
129 N A -2.2295
130 Y A -1.2947
131 P A -1.8497
132 Q A -1.6622
133 L A 0.0000
134 F A 0.0000
135 S A -1.4089
136 N A -1.8861
137 S A -1.3502
138 A A 0.0000
139 K A -1.6610
140 I A 0.0000
141 E A -1.1530
142 A A 0.0000
143 I A 0.0000
144 A A 0.0000
145 T A 0.0000
146 Y A -0.2251
147 V A -0.2163
148 P A -0.5387
149 R A -1.0152
150 S A 0.0000
151 I A -0.3701
152 N A -1.1782
153 S A 0.0000
154 M A 0.0000
155 D A -1.2386
156 A A -1.1566
157 F A 0.0000
158 L A 0.0000
159 S A -0.7459
160 C A 0.0000
161 M A 0.0000
162 I A -0.4904
163 R A -1.8247
164 H A -1.4983
165 N A -1.2204
166 P A -0.9985
167 A A -0.9850
168 L A 0.0000
169 Q A -1.7405
170 V A -1.1099
171 Q A -1.8430
172 R A -1.9144
173 S A -1.0744
174 E A -1.0660
175 G A -1.1950
176 K A -2.3898
177 Q A -2.2038
178 Y A -1.3553
179 N A -1.4928
180 H A -1.3473
181 I A -0.3662
182 L A 0.0000
183 R A -0.9308
184 F A 0.0000
185 F A 0.0000
186 D A -1.0581
187 L A -0.0457
188 N A -0.9675
189 K A -1.9219
190 S A -1.3627
191 Y A 0.0000
192 V A -1.6371
193 N A -2.2765
194 Y A -2.1159
195 K A -2.5760
196 E A -3.2481
197 K A -3.2545
198 G A -2.3826
199 D A -2.1693
200 W A 0.0000
201 L A -1.3545
202 P A -0.9745
203 I A -0.3337
204 Y A -0.9667
205 K A -1.6931
206 A A -1.2637
207 F A 0.0000
208 V A 0.0000
209 H A -2.7302
210 K A -2.7839
211 K A -1.9960
212 I A 0.0000
213 S A -1.0751
214 P A -1.4180
215 V A -1.1288
216 P A -0.9748
217 I A 0.0000
218 M A 0.0000
219 K A -2.4004
220 K A -1.7603
221 F A 0.0000
222 L A 0.0000
223 L A -0.7111
224 N A -1.9552
225 P A -1.8720
226 E A -2.7464
227 Q A -2.0448
228 Y A -1.4744
229 L A -1.3467
230 D A -3.1699
231 K A -3.4937
232 E A -3.1162
233 A A 0.0000
234 E A -2.4737
235 E A -2.8781
236 F A 0.0000
237 V A 0.0000
238 M A -0.7702
239 A A 0.0000
240 L A 0.0000
241 F A 0.0000
242 S A -0.2317
243 V A 0.0000
244 A A 0.0000
245 A A 0.0000
246 I A 0.0000
247 L A 0.0000
248 P A -0.3655
249 D A 0.0000
250 T A 0.0000
251 S A -0.4841
252 I A -0.1685
253 P A -0.3267
254 L A -0.4063
255 N A -1.5880
256 L A 0.0000
257 E A -1.5092
258 D A -2.1493
259 L A 0.0000
260 F A 0.0000
261 T A -1.1169
262 L A -1.2627
263 D A -2.1388
264 E A -1.6009
265 W A 0.0000
266 H A -1.7239
267 R A -1.9254
268 Y A 0.0000
269 W A 0.0000
270 Q A 0.0000
271 T A 0.0000
272 Q A -0.4352
273 N A 0.0000
274 L A 0.0000
275 R A -0.6755
276 Q A 0.0000
277 Y A 0.0000
278 M A 0.0000
279 S A 0.0000
280 K A -0.5117
281 S A 0.0000
282 S A 0.0000
283 A A 0.0000
284 P A -0.5232
285 V A -0.3169
286 G A 0.0000
287 K A -1.2444
288 M A -0.6676
289 L A 0.0000
290 P A 0.0000
291 V A 0.0000
292 A A 0.0000
293 I A 0.0000
294 A A 0.0000
295 W A -0.4350
296 P A 0.0000
297 L A 0.0000
298 L A 0.0000
299 S A 0.0000
300 E A -0.9588
301 F A 0.0000
302 I A 0.0000
303 R A -2.2946
304 S A -1.6695
305 A A 0.0000
306 Q A -1.7985
307 E A -2.4320
308 V A -1.4982
309 I A -0.9305
310 S A -1.3014
311 G A -1.8922
312 K A -2.5839
313 S A -2.0026
314 D A -2.0883
315 Y A -1.1850
316 Q A -0.6475
317 A A 0.0000
318 N A 0.0000
319 F A 0.0000
320 R A 0.0000
321 F A 0.0000
322 A A 0.0000
323 H A 0.0000
324 A A 0.0000
325 E A -0.7055
326 T A 0.0000
327 V A 0.0000
328 I A 0.0000
329 P A 0.0000
330 F A 0.0000
331 V A 0.0000
332 S A 0.0000
333 L A 0.0000
334 M A 0.0000
335 G A 0.0000
336 I A 0.0000
337 E A -1.0343
338 K A -1.4037
339 T A 0.0000
340 D A -0.7829
341 V A -0.4803
342 Q A -0.6284
343 V A 0.0000
344 C A -0.8256
345 R A -2.3413
346 P A -1.7560
347 D A -2.3301
348 S A -0.9460
349 V A 0.0000
350 S A 0.3289
351 V A 1.5052
352 Y A 0.7113
353 W A 0.0000
354 K A -0.8944
355 D A 0.0000
356 Y A 0.0000
357 E A -2.0233
358 I A 0.0000
359 S A 0.0000
360 P A 0.0000
361 M A 0.0000
362 A A 0.0000
363 A A 0.0000
364 N A 0.0000
365 V A 0.0000
366 Q A 0.0000
367 W A 0.0000
368 L A 0.0000
369 F A 0.0000
370 Y A 0.0000
371 R A -3.1873
372 D A -3.2738
373 R A -3.8460
374 D A -4.0964
375 Q A -3.9602
376 R A -3.6626
377 I A 0.0000
378 W A -1.2374
379 V A 0.0000
380 K A -0.2051
381 I A 0.0000
382 L A -0.5999
383 L A -0.7608
384 N A 0.0000
385 E A -1.2513
386 E A -1.9577
387 A A -0.8419
388 A A 0.0000
389 A A 0.0000
390 L A 0.0000
391 P A -0.2775
392 I A -0.1097
393 S A -0.3473
394 T A -0.1536
395 A A -0.0588
396 C A 0.1116
397 F A 0.0000
398 P A 0.0349
399 Y A 0.3378
400 Y A 0.0000
401 S A -1.2723
402 W A 0.0000
403 E A -2.4565
404 K A -1.9828
405 T A 0.0000
406 R A -1.4247
407 I A -0.3336
408 F A 0.0000
409 F A 0.0000
410 N A -1.6177
411 Q A -2.0332
412 R A -1.4690
413 I A 0.0000
414 E A -3.0419
415 M A -1.9101
416 A A 0.0000
417 K A -2.2440
418 K A -2.0336
419 T A -1.0113
420 L A -0.6716
421 S A -0.3848
422 V A 0.8862
423 F A 0.1175
424 N A -0.8356
21 Q B -2.0009
22 T B -1.6183
23 K B -2.0400
24 I B -1.2149
25 Q B -1.4700
26 K B -1.7792
27 Y B 0.0000
28 A B -0.5559
29 G B 0.0000
30 T B -0.3744
31 A B -0.1449
32 M B 0.0000
33 P B -0.3936
34 Y B -0.5654
35 P B 0.0000
36 N B -1.6654
37 R B -1.3271
38 T B -0.6323
48 M B 0.8313
49 T B -0.1205
50 P B 0.0000
51 F B -0.0334
52 Y B 0.0000
53 I B 0.0000
54 N B 0.0000
55 H B 0.0000
56 L B 0.0000
57 G B 0.0000
58 R B 0.0000
59 H B 0.0000
60 G B 0.0000
61 A B 0.0000
62 R B -0.8657
63 F B -0.5103
64 P B -0.5669
65 T B -0.6656
66 S B -1.1406
67 R B -2.2677
68 K B -2.6803
69 A B -2.1354
70 L B 0.0000
71 D B -2.6934
72 K B -2.7538
73 V B 0.0000
74 E B -2.3016
75 K B -2.3810
76 V B 0.0000
77 L B 0.0000
78 V B -1.1687
79 S B -1.4996
80 A B 0.0000
81 Q B -1.9779
82 Q B -2.5365
83 E B -3.0833
84 N B -2.3659
85 G B -1.3092
86 L B -0.8794
87 T B -0.6667
88 S B -0.4648
89 E B -1.2672
90 G B 0.0000
91 M B 0.0162
92 A B -0.0918
93 L B 0.0000
94 L B 0.0000
95 S B -1.0808
96 M B -0.8622
97 I B 0.0000
98 R B -2.8045
99 R B -3.1516
100 L B 0.0000
101 S B -2.7072
102 R B -3.2293
103 L B -1.5588
104 F B 0.0000
105 D B -2.8228
106 G B -1.7420
107 Q B -1.4349
108 W B -0.9409
109 G B 0.0000
110 K B -1.6386
111 L B -1.3726
112 S B 0.0000
113 K B -2.0435
114 L B -1.0369
115 G B 0.0000
116 E B -2.3730
117 T B -1.5779
118 E B 0.0000
119 Q B 0.0000
120 E B -2.2516
121 G B -1.4251
122 I B 0.0000
123 A B 0.0000
124 G B 0.0000
125 R B -1.6774
126 M B 0.0000
127 I B -1.5522
128 R B -2.6329
129 N B -2.3410
130 Y B -1.3168
131 P B -1.8248
132 Q B -1.7918
133 L B 0.0000
134 F B 0.0000
135 S B -1.4396
136 N B -1.8588
137 S B -1.3136
138 A B 0.0000
139 K B -1.7665
140 I B 0.0000
141 E B -1.2343
142 A B 0.0000
143 I B 0.0000
144 A B 0.0000
145 T B 0.0000
146 Y B -0.1687
147 V B -0.1766
148 P B -0.5602
149 R B -1.0091
150 S B 0.0000
151 I B -0.5755
152 N B -1.5595
153 S B 0.0000
154 M B 0.0000
155 D B -1.4980
156 A B -1.3612
157 F B 0.0000
158 L B 0.0000
159 S B -0.9271
160 C B 0.0000
161 M B 0.0000
162 I B -0.6267
163 R B -1.9958
164 H B -1.5997
165 N B -1.3610
166 P B -1.0599
167 A B -1.0002
168 L B 0.0000
169 Q B -1.4355
170 V B -1.0306
171 Q B -1.8108
172 R B -1.9246
173 S B -1.1590
174 E B -1.0992
175 G B -1.1029
176 K B -2.3455
177 Q B -2.1852
178 Y B -1.3080
179 N B -1.6268
180 H B -1.5014
181 I B -0.3406
182 L B 0.0000
183 R B -1.1505
184 F B 0.0000
185 F B 0.0000
186 D B -1.7273
187 L B -0.6091
188 N B -1.2227
189 K B -2.0299
190 S B -1.2355
191 Y B 0.0000
192 V B -1.6784
193 N B -2.1348
194 Y B 0.0000
195 K B -2.4674
196 E B -3.1618
197 K B -3.2160
198 G B -2.3099
199 D B -2.1970
200 W B 0.0000
201 L B -1.3942
202 P B -0.9847
203 I B -0.3406
204 Y B -1.0051
205 K B -1.7495
206 A B -1.2821
207 F B 0.0000
208 V B 0.0000
209 H B -2.6605
210 K B -2.5648
211 K B -1.8408
212 I B 0.0000
213 S B -0.7271
214 P B -0.8888
215 V B 0.0510
216 P B -0.4049
217 I B 0.0000
218 M B 0.0000
219 K B -2.1053
220 K B -1.6220
221 F B 0.0000
222 L B 0.0000
223 L B -0.4115
224 N B -1.7866
225 P B -1.8379
226 E B -2.5753
227 Q B -2.0833
228 Y B -1.4627
229 L B -0.9907
230 D B -2.8930
231 K B -3.2444
232 E B -2.6665
233 A B 0.0000
234 E B -2.2363
235 E B -3.0177
236 F B 0.0000
237 V B 0.0000
238 M B -0.7144
239 A B 0.0000
240 L B 0.0000
241 F B 0.0000
242 S B -0.0468
243 V B 0.0000
244 A B 0.0000
245 A B -0.3330
246 I B 0.0000
247 L B 0.0000
248 P B -0.4406
249 D B 0.0000
250 T B 0.0000
251 S B -0.4443
252 I B -0.1070
253 P B -0.3416
254 L B -0.4759
255 N B -1.6547
256 L B 0.0000
257 E B -1.6737
258 D B -2.1615
259 L B 0.0000
260 F B 0.0000
261 T B -0.7994
262 L B -0.7162
263 D B -1.7200
264 E B -1.2663
265 W B 0.0000
266 H B -1.4163
267 R B -1.5013
268 Y B 0.0000
269 W B 0.0000
270 Q B 0.0000
271 T B 0.0000
272 Q B -0.4106
273 N B 0.0000
274 L B 0.0000
275 R B -0.6167
276 Q B 0.0000
277 Y B 0.0000
278 M B 0.0000
279 S B 0.0000
280 K B 0.0000
281 S B 0.0000
282 S B 0.0000
283 A B 0.0000
284 P B -0.3570
285 V B -0.2086
286 G B 0.0000
287 K B -1.4902
288 M B -0.6508
289 L B 0.0000
290 P B 0.0000
291 V B 0.0000
292 A B 0.0000
293 I B 0.0000
294 A B 0.0000
295 W B -0.2714
296 P B 0.0000
297 L B 0.0000
298 L B 0.0000
299 S B 0.0000
300 E B -0.8868
301 F B 0.0000
302 I B 0.0000
303 R B -2.2460
304 S B -1.4942
305 A B 0.0000
306 Q B -1.7504
307 E B -2.4551
308 V B -1.6019
309 I B -0.9155
310 S B -1.2813
311 G B -1.9407
312 K B -2.6439
313 S B -2.2112
314 D B -2.4708
315 Y B -1.5217
316 Q B -0.8518
317 A B 0.0000
318 N B 0.0000
319 F B 0.0000
320 R B 0.0000
321 F B 0.0000
322 A B 0.0000
323 H B 0.0000
324 A B 0.0000
325 E B -0.6992
326 T B 0.0000
327 V B 0.0000
328 I B 0.0000
329 P B 0.0000
330 F B 0.0000
331 V B 0.0000
332 S B 0.0000
333 L B 0.0000
334 M B 0.0000
335 G B 0.0000
336 I B 0.0000
337 E B -0.9583
338 K B -1.1769
339 T B 0.0000
340 D B -0.8164
341 V B 0.0000
342 Q B -0.5423
343 V B 0.0000
344 C B -0.1334
345 R B -1.6715
346 P B -0.7519
347 D B -0.6604
348 S B -0.1134
349 V B 0.0000
350 S B 0.4860
351 V B 1.7286
352 Y B 0.7788
353 W B 0.0000
354 K B -0.7458
355 D B 0.0000
356 Y B 0.0000
357 E B -1.9769
358 I B 0.0000
359 S B 0.0000
360 P B 0.0000
361 M B 0.0000
362 A B 0.0000
363 A B 0.0000
364 N B 0.0000
365 V B 0.0000
366 Q B 0.0000
367 W B 0.0000
368 L B 0.0000
369 F B 0.0000
370 Y B 0.0000
371 R B -2.9728
372 D B -3.2236
373 R B -3.8628
374 D B -4.1656
375 Q B -4.0670
376 R B -3.9480
377 I B -1.9759
378 W B -1.1731
379 V B 0.0000
380 K B -0.3176
381 I B 0.0000
382 L B 0.0000
383 L B -0.7795
384 N B 0.0000
385 E B -1.2669
386 E B -1.9854
387 A B -0.7286
388 A B 0.0000
389 A B 0.0000
390 L B 0.0000
391 P B -0.1048
392 I B 0.0925
393 S B -0.2058
394 T B -0.0776
395 A B -0.1464
396 C B -0.1149
397 F B 0.0000
398 P B -0.3214
399 Y B 0.1296
400 Y B 0.0000
401 S B -1.2335
402 W B 0.0000
403 E B -2.1395
404 K B -1.3307
405 T B 0.0000
406 R B -0.9664
407 I B 0.3887
408 F B -0.1778
409 F B 0.0000
410 N B -1.1946
411 Q B -1.7813
412 R B -1.5172
413 I B 0.0000
414 E B -3.1063
415 M B -2.0131
416 A B 0.0000
417 K B -2.1890
418 K B -2.1595
419 T B -1.0595
420 L B -0.4693
421 S B -0.2663
422 V B 1.1356
423 F B 0.1669
424 N B -0.8496
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018