Project name: query_structure

Status: done

Started: 2026-03-16 21:42:29
Settings
Chain sequence(s) A: MLPAPKNLVVSRVTEDSARLSWTAPDAAFDSFKIGYWEWRKYGEAIELNVPGSERSYDLTGLKPGTEYRVLIYGVKGGAGSHPLRALFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:07)
Show buried residues

Minimal score value
-3.0262
Maximal score value
0.923
Average score
-0.9598
Total score value
-86.3786

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.9161
2 L A 0.3158
3 P A -0.3670
4 A A -0.7079
5 P A 0.0000
6 K A -1.9889
7 N A -1.5182
8 L A -0.3884
9 V A 0.9230
10 V A 0.5249
11 S A -0.6317
12 R A -2.0269
13 V A -1.0457
14 T A -1.7901
15 E A -3.0262
16 D A -2.7091
17 S A -2.0831
18 A A 0.0000
19 R A -1.2274
20 L A 0.0000
21 S A -0.3768
22 W A 0.0000
23 T A -1.2934
24 A A -1.4152
25 P A -1.4127
26 D A -2.2747
27 A A -1.4353
28 A A -1.1655
29 F A 0.0000
30 D A -2.4289
31 S A -1.7407
32 F A 0.0000
33 K A -1.0553
34 I A 0.0000
35 G A -0.9619
36 Y A -0.3237
37 W A -0.6680
38 E A -1.4176
39 W A -1.1291
40 R A -2.4506
41 K A -2.2942
42 Y A -0.3753
43 G A -1.0357
44 E A -1.8117
45 A A -0.7529
46 I A -0.5309
47 E A -1.8572
48 L A -1.1803
49 N A -1.7165
50 V A 0.0000
51 P A -1.4351
52 G A 0.0000
53 S A -1.6218
54 E A -1.5514
55 R A -1.1594
56 S A -0.6505
57 Y A -0.7413
58 D A -1.7162
59 L A 0.0000
60 T A -1.3619
61 G A -1.4910
62 L A 0.0000
63 K A -2.9513
64 P A -2.4923
65 G A -1.7577
66 T A -2.0196
67 E A -1.6085
68 Y A 0.0000
69 R A -0.5361
70 V A 0.0000
71 L A -0.3718
72 I A 0.0000
73 Y A -0.5553
74 G A 0.0000
75 V A -1.1778
76 K A -1.6876
77 G A -1.4089
78 G A -1.1460
79 A A -0.6547
80 G A -0.4642
81 S A 0.0000
82 H A -0.7664
83 P A -0.9128
84 L A -0.9514
85 R A -1.3424
86 A A -0.0015
87 L A 0.7546
88 F A 0.0000
89 T A -0.8193
90 T A -1.8441
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Laboratory of Theory of Biopolymers 2018