Project name: Npl3 RRM 1.3

Status: done

Started: 2025-12-29 09:06:13
Settings
Chain sequence(s) A: PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:39)
Show buried residues

Minimal score value
-4.0802
Maximal score value
0.9359
Average score
-1.3235
Total score value
-105.8787

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
25 P A -0.8131
26 A A -0.7789
27 K A -1.7834
28 R A -2.6722
29 Y A 0.0000
30 R A -2.7885
31 I A 0.0000
32 T A -1.7382
33 M A 0.0000
34 K A -0.8567
35 N A -0.0088
36 L A 0.9359
37 P A 0.2565
38 E A 0.0000
39 G A -1.3250
40 C A 0.0000
41 S A -1.1435
42 W A -0.8871
43 Q A -1.8393
44 D A -1.6877
45 L A 0.0000
46 K A -2.3411
47 D A -2.7051
48 L A 0.0000
49 A A 0.0000
50 R A -3.6441
51 E A -3.3243
52 N A -2.7209
53 S A -2.2046
54 L A 0.0000
55 E A -2.0714
56 T A 0.0000
57 T A 0.2716
58 F A 0.7766
59 S A 0.1320
60 S A -0.3364
61 V A -1.2495
62 N A -2.2921
63 T A -2.0533
64 R A -3.2802
65 D A -2.8218
66 F A -0.8834
67 D A -2.1509
68 G A 0.0000
69 T A -1.2892
70 G A 0.0000
71 A A 0.0000
72 L A 0.0000
73 E A 0.0000
74 F A -0.7603
75 P A -1.3319
76 S A -1.2676
77 E A -1.7729
78 E A -1.6849
79 I A -1.0959
80 L A 0.0000
81 V A -0.4865
82 E A -1.7247
83 A A 0.0000
84 L A -1.9665
85 E A -2.8980
86 R A -3.0376
87 L A 0.0000
88 N A -2.9188
89 N A -2.3733
90 I A -2.0692
91 E A -2.4730
92 F A 0.0000
93 R A -2.4970
94 G A -1.7538
95 S A -1.0936
96 V A -1.2275
97 I A 0.0000
98 T A -1.4981
99 V A 0.0000
100 E A -3.1533
101 R A -3.9128
102 D A -3.9437
103 D A -4.0802
104 N A -3.5395
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Laboratory of Theory of Biopolymers 2018