| Chain sequence(s) |
A: GGGHKFF
C: GGGHKFF B: GGGHKFF E: GGGHKFF D: GGGHKFF G: GGGHKFF F: GGGHKFF I: GGGHKFF H: GGGHKFF K: GGGHKFF J: GGGHKFF M: GGGHKFF L: GGGHKFF O: GGGHKFF N: GGGHKFF Q: GGGHKFF P: GGGHKFF S: GGGHKFF R: GGGHKFF T: GGGHKFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:17)
[INFO] Main: Simulation completed successfully. (00:04:22)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.2172 | |
| 2 | G | A | 0.3872 | |
| 3 | G | A | 0.8201 | |
| 4 | H | A | 0.4538 | |
| 5 | K | A | 0.0000 | |
| 6 | F | A | 0.5100 | |
| 7 | F | A | 0.7610 | |
| 1 | G | B | -0.5377 | |
| 2 | G | B | -0.1475 | |
| 3 | G | B | -0.0879 | |
| 4 | H | B | -0.1923 | |
| 5 | K | B | -0.0703 | |
| 6 | F | B | 0.0000 | |
| 7 | F | B | 1.2929 | |
| 1 | G | C | -0.2855 | |
| 2 | G | C | 0.6810 | |
| 3 | G | C | 0.8166 | |
| 4 | H | C | 0.5138 | |
| 5 | K | C | 0.3294 | |
| 6 | F | C | 0.7866 | |
| 7 | F | C | 1.4658 | |
| 1 | G | D | -0.4863 | |
| 2 | G | D | -0.2958 | |
| 3 | G | D | -0.4644 | |
| 4 | H | D | -0.6529 | |
| 5 | K | D | 0.0014 | |
| 6 | F | D | 1.9862 | |
| 7 | F | D | 2.2318 | |
| 1 | G | E | -1.0475 | |
| 2 | G | E | -1.3521 | |
| 3 | G | E | -1.6143 | |
| 4 | H | E | -1.9031 | |
| 5 | K | E | -1.3809 | |
| 6 | F | E | 0.9991 | |
| 7 | F | E | 2.2800 | |
| 1 | G | F | -1.2797 | |
| 2 | G | F | -1.4400 | |
| 3 | G | F | -1.7431 | |
| 4 | H | F | 0.0000 | |
| 5 | K | F | -1.1204 | |
| 6 | F | F | 1.1649 | |
| 7 | F | F | 3.1073 | |
| 1 | G | G | -1.2893 | |
| 2 | G | G | -1.3779 | |
| 3 | G | G | -1.5421 | |
| 4 | H | G | -1.6614 | |
| 5 | K | G | -0.7880 | |
| 6 | F | G | 1.5076 | |
| 7 | F | G | 3.0135 | |
| 1 | G | H | -1.3143 | |
| 2 | G | H | -1.4488 | |
| 3 | G | H | -1.7474 | |
| 4 | H | H | -1.6376 | |
| 5 | K | H | -0.8349 | |
| 6 | F | H | 0.0000 | |
| 7 | F | H | 3.2173 | |
| 1 | G | I | -1.1677 | |
| 2 | G | I | -1.2644 | |
| 3 | G | I | -1.7148 | |
| 4 | H | I | -1.5352 | |
| 5 | K | I | -1.1815 | |
| 6 | F | I | 1.1795 | |
| 7 | F | I | 2.5243 | |
| 1 | G | J | -0.2075 | |
| 2 | G | J | 0.5207 | |
| 3 | G | J | 0.8475 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | 0.0000 | |
| 6 | F | J | 0.0000 | |
| 7 | F | J | -0.1595 | |
| 1 | G | K | -0.7578 | |
| 2 | G | K | -0.8273 | |
| 3 | G | K | -0.9208 | |
| 4 | H | K | -1.2434 | |
| 5 | K | K | -0.3105 | |
| 6 | F | K | 1.0032 | |
| 7 | F | K | 2.0594 | |
| 1 | G | L | 0.0157 | |
| 2 | G | L | 1.0694 | |
| 3 | G | L | 1.5661 | |
| 4 | H | L | 1.1508 | |
| 5 | K | L | 0.0000 | |
| 6 | F | L | 0.5643 | |
| 7 | F | L | -0.3081 | |
| 1 | G | M | -0.8237 | |
| 2 | G | M | -0.8538 | |
| 3 | G | M | -0.8883 | |
| 4 | H | M | -0.9602 | |
| 5 | K | M | -0.0470 | |
| 6 | F | M | 1.3272 | |
| 7 | F | M | 2.1277 | |
| 1 | G | N | -0.0721 | |
| 2 | G | N | 0.7410 | |
| 3 | G | N | 1.4305 | |
| 4 | H | N | 0.8091 | |
| 5 | K | N | 0.5290 | |
| 6 | F | N | 0.9158 | |
| 7 | F | N | 1.0923 | |
| 1 | G | O | -0.2393 | |
| 2 | G | O | 0.4337 | |
| 3 | G | O | 0.7099 | |
| 4 | H | O | 0.2238 | |
| 5 | K | O | 0.0284 | |
| 6 | F | O | 0.9632 | |
| 7 | F | O | 1.4543 | |
| 1 | G | P | -0.2568 | |
| 2 | G | P | 0.3397 | |
| 3 | G | P | 0.5831 | |
| 4 | H | P | -0.2666 | |
| 5 | K | P | -0.3503 | |
| 6 | F | P | 0.7630 | |
| 7 | F | P | 1.2240 | |
| 1 | G | Q | -0.6464 | |
| 2 | G | Q | -0.6257 | |
| 3 | G | Q | -0.4777 | |
| 4 | H | Q | -0.3840 | |
| 5 | K | Q | 0.8298 | |
| 6 | F | Q | 2.1769 | |
| 7 | F | Q | 2.6793 | |
| 1 | G | R | -0.0548 | |
| 2 | G | R | 0.8259 | |
| 3 | G | R | 1.1369 | |
| 4 | H | R | 0.0937 | |
| 5 | K | R | -0.7103 | |
| 6 | F | R | 0.0100 | |
| 7 | F | R | 0.4375 | |
| 1 | G | S | -0.6358 | |
| 2 | G | S | -0.6781 | |
| 3 | G | S | -1.0281 | |
| 4 | H | S | -1.4318 | |
| 5 | K | S | -0.9055 | |
| 6 | F | S | 1.7142 | |
| 7 | F | S | 2.3815 | |
| 1 | G | T | -0.8391 | |
| 2 | G | T | -0.8872 | |
| 3 | G | T | -0.7704 | |
| 4 | H | T | -0.5913 | |
| 5 | K | T | 0.4149 | |
| 6 | F | T | 2.2574 | |
| 7 | F | T | 2.7192 |