Project name: 79cf60a2f73d738

Status: done

Started: 2026-02-12 09:26:11
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Chain sequence(s) A: GGGHKFF
C: GGGHKFF
B: GGGHKFF
E: GGGHKFF
D: GGGHKFF
G: GGGHKFF
F: GGGHKFF
I: GGGHKFF
H: GGGHKFF
K: GGGHKFF
J: GGGHKFF
M: GGGHKFF
L: GGGHKFF
O: GGGHKFF
N: GGGHKFF
Q: GGGHKFF
P: GGGHKFF
S: GGGHKFF
R: GGGHKFF
T: GGGHKFF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:22)
Show buried residues

Minimal score value
-1.9031
Maximal score value
3.2173
Average score
0.123
Total score value
17.2177

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.2172
2 G A 0.3872
3 G A 0.8201
4 H A 0.4538
5 K A 0.0000
6 F A 0.5100
7 F A 0.7610
1 G B -0.5377
2 G B -0.1475
3 G B -0.0879
4 H B -0.1923
5 K B -0.0703
6 F B 0.0000
7 F B 1.2929
1 G C -0.2855
2 G C 0.6810
3 G C 0.8166
4 H C 0.5138
5 K C 0.3294
6 F C 0.7866
7 F C 1.4658
1 G D -0.4863
2 G D -0.2958
3 G D -0.4644
4 H D -0.6529
5 K D 0.0014
6 F D 1.9862
7 F D 2.2318
1 G E -1.0475
2 G E -1.3521
3 G E -1.6143
4 H E -1.9031
5 K E -1.3809
6 F E 0.9991
7 F E 2.2800
1 G F -1.2797
2 G F -1.4400
3 G F -1.7431
4 H F 0.0000
5 K F -1.1204
6 F F 1.1649
7 F F 3.1073
1 G G -1.2893
2 G G -1.3779
3 G G -1.5421
4 H G -1.6614
5 K G -0.7880
6 F G 1.5076
7 F G 3.0135
1 G H -1.3143
2 G H -1.4488
3 G H -1.7474
4 H H -1.6376
5 K H -0.8349
6 F H 0.0000
7 F H 3.2173
1 G I -1.1677
2 G I -1.2644
3 G I -1.7148
4 H I -1.5352
5 K I -1.1815
6 F I 1.1795
7 F I 2.5243
1 G J -0.2075
2 G J 0.5207
3 G J 0.8475
4 H J 0.0000
5 K J 0.0000
6 F J 0.0000
7 F J -0.1595
1 G K -0.7578
2 G K -0.8273
3 G K -0.9208
4 H K -1.2434
5 K K -0.3105
6 F K 1.0032
7 F K 2.0594
1 G L 0.0157
2 G L 1.0694
3 G L 1.5661
4 H L 1.1508
5 K L 0.0000
6 F L 0.5643
7 F L -0.3081
1 G M -0.8237
2 G M -0.8538
3 G M -0.8883
4 H M -0.9602
5 K M -0.0470
6 F M 1.3272
7 F M 2.1277
1 G N -0.0721
2 G N 0.7410
3 G N 1.4305
4 H N 0.8091
5 K N 0.5290
6 F N 0.9158
7 F N 1.0923
1 G O -0.2393
2 G O 0.4337
3 G O 0.7099
4 H O 0.2238
5 K O 0.0284
6 F O 0.9632
7 F O 1.4543
1 G P -0.2568
2 G P 0.3397
3 G P 0.5831
4 H P -0.2666
5 K P -0.3503
6 F P 0.7630
7 F P 1.2240
1 G Q -0.6464
2 G Q -0.6257
3 G Q -0.4777
4 H Q -0.3840
5 K Q 0.8298
6 F Q 2.1769
7 F Q 2.6793
1 G R -0.0548
2 G R 0.8259
3 G R 1.1369
4 H R 0.0937
5 K R -0.7103
6 F R 0.0100
7 F R 0.4375
1 G S -0.6358
2 G S -0.6781
3 G S -1.0281
4 H S -1.4318
5 K S -0.9055
6 F S 1.7142
7 F S 2.3815
1 G T -0.8391
2 G T -0.8872
3 G T -0.7704
4 H T -0.5913
5 K T 0.4149
6 F T 2.2574
7 F T 2.7192
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Laboratory of Theory of Biopolymers 2018