| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSCAGSGRTFSSYNMGWFRQAPGKEREFVGGISWTGRSADYPDSVKGRFTISRDNAKNAVYLQMNSLKPEDTAVYYCAATQRGYSANQGVYADWGQGTQVTVSSGAAEPEA
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:22)
[INFO] Main: Simulation completed successfully. (00:01:23)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -2.0426 | |
| 2 | V | A | 0.0000 | |
| 3 | Q | A | -2.2082 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.6250 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.1742 | |
| 8 | G | A | -1.0074 | |
| 9 | G | A | -0.8333 | |
| 10 | G | A | -0.0639 | |
| 11 | L | A | 1.0492 | |
| 12 | V | A | -0.0220 | |
| 13 | Q | A | -1.3298 | |
| 14 | A | A | -1.5233 | |
| 15 | G | A | -1.3862 | |
| 16 | G | A | -0.9232 | |
| 17 | S | A | -1.2605 | |
| 18 | L | A | -1.0586 | |
| 19 | R | A | -2.1231 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8297 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -1.1149 | |
| 24 | G | A | -1.5847 | |
| 25 | S | A | -1.6470 | |
| 26 | G | A | -2.1422 | |
| 27 | R | A | -2.5015 | |
| 28 | T | A | -1.2914 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -0.9931 | |
| 31 | S | A | -1.0094 | |
| 32 | Y | A | -0.8227 | |
| 33 | N | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | -0.8208 | |
| 38 | R | A | -1.7516 | |
| 39 | Q | A | -2.4209 | |
| 40 | A | A | -2.2201 | |
| 41 | P | A | -1.4452 | |
| 42 | G | A | -1.9538 | |
| 43 | K | A | -3.5240 | |
| 44 | E | A | -3.8240 | |
| 45 | R | A | -3.2689 | |
| 46 | E | A | -2.9871 | |
| 47 | F | A | -1.2722 | |
| 48 | V | A | 0.0000 | |
| 49 | G | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | -0.9774 | |
| 53 | W | A | -0.7260 | |
| 54 | T | A | -0.7588 | |
| 55 | G | A | -1.2836 | |
| 56 | R | A | -2.0274 | |
| 57 | S | A | -1.3099 | |
| 58 | A | A | -0.9714 | |
| 59 | D | A | -1.2616 | |
| 60 | Y | A | -1.3168 | |
| 61 | P | A | -1.8093 | |
| 62 | D | A | -2.6155 | |
| 63 | S | A | -1.6410 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.7850 | |
| 66 | G | A | -1.8305 | |
| 67 | R | A | -1.4305 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.9512 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.6478 | |
| 72 | R | A | -1.1198 | |
| 73 | D | A | -1.4809 | |
| 74 | N | A | -1.6082 | |
| 75 | A | A | -1.3924 | |
| 76 | K | A | -2.3119 | |
| 77 | N | A | -1.8937 | |
| 78 | A | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.5557 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2240 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4428 | |
| 85 | S | A | -1.2281 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.2026 | |
| 88 | P | A | -1.8473 | |
| 89 | E | A | -2.2655 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9442 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7298 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.6823 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | T | A | 0.0000 | |
| 100 | Q | A | -1.3602 | |
| 101 | R | A | -2.1645 | |
| 102 | G | A | -1.0779 | |
| 103 | Y | A | -0.1386 | |
| 104 | S | A | -0.7340 | |
| 105 | A | A | -0.7575 | |
| 106 | N | A | -1.1037 | |
| 107 | Q | A | -1.0136 | |
| 108 | G | A | -0.0958 | |
| 109 | V | A | 1.4212 | |
| 110 | Y | A | 0.0000 | |
| 111 | A | A | 0.3737 | |
| 112 | D | A | 0.0000 | |
| 113 | W | A | -0.1855 | |
| 114 | G | A | -0.9631 | |
| 115 | Q | A | -1.6105 | |
| 116 | G | A | -1.0433 | |
| 117 | T | A | 0.0000 | |
| 118 | Q | A | -1.2428 | |
| 119 | V | A | 0.0000 | |
| 120 | T | A | -0.2752 | |
| 121 | V | A | 0.0000 | |
| 122 | S | A | -0.8259 | |
| 123 | S | A | -1.1896 | |
| 124 | G | A | -1.2108 | |
| 125 | A | A | -1.3302 | |
| 126 | A | A | -1.3400 | |
| 127 | E | A | -2.4963 | |
| 128 | P | A | -1.9759 | |
| 129 | E | A | -2.4401 | |
| 130 | A | A | -1.2146 |