| Chain sequence(s) |
A: GGGHKGF
C: GGGHKGF B: GGGHKGF E: GGGHKGF D: GGGHKGF G: GGGHKGF F: GGGHKGF I: GGGHKGF H: GGGHKGF K: GGGHKGF J: GGGHKGF L: GGGHKGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:16)
[INFO] Main: Simulation completed successfully. (00:01:19)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.0221 | |
| 2 | G | A | -1.3272 | |
| 3 | G | A | 0.0000 | |
| 4 | H | A | -1.9494 | |
| 5 | K | A | 0.0000 | |
| 6 | G | A | -0.2802 | |
| 7 | F | A | 0.5331 | |
| 1 | G | B | -0.8105 | |
| 2 | G | B | -1.2916 | |
| 3 | G | B | -1.5206 | |
| 4 | H | B | -2.2718 | |
| 5 | K | B | 0.0000 | |
| 6 | G | B | -0.2080 | |
| 7 | F | B | 0.7879 | |
| 1 | G | C | -0.7145 | |
| 2 | G | C | -1.1993 | |
| 3 | G | C | -1.3696 | |
| 4 | H | C | -2.1999 | |
| 5 | K | C | -1.4947 | |
| 6 | G | C | -0.1931 | |
| 7 | F | C | 1.5335 | |
| 1 | G | D | -0.4440 | |
| 2 | G | D | -0.9880 | |
| 3 | G | D | -1.0497 | |
| 4 | H | D | -1.7701 | |
| 5 | K | D | -0.9562 | |
| 6 | G | D | 0.2444 | |
| 7 | F | D | 1.6528 | |
| 1 | G | E | -0.9381 | |
| 2 | G | E | -1.2925 | |
| 3 | G | E | -1.3035 | |
| 4 | H | E | -1.6074 | |
| 5 | K | E | 0.0000 | |
| 6 | G | E | 0.1645 | |
| 7 | F | E | 1.0729 | |
| 1 | G | F | -0.9124 | |
| 2 | G | F | -1.1721 | |
| 3 | G | F | 0.0000 | |
| 4 | H | F | -1.4782 | |
| 5 | K | F | 0.0000 | |
| 6 | G | F | 0.0103 | |
| 7 | F | F | 0.8458 | |
| 1 | G | G | -0.8994 | |
| 2 | G | G | -1.0870 | |
| 3 | G | G | -0.9411 | |
| 4 | H | G | -1.0458 | |
| 5 | K | G | 0.0000 | |
| 6 | G | G | 0.0956 | |
| 7 | F | G | 0.8786 | |
| 1 | G | H | -0.7708 | |
| 2 | G | H | -1.0834 | |
| 3 | G | H | -1.1486 | |
| 4 | H | H | -1.5318 | |
| 5 | K | H | 0.0000 | |
| 6 | G | H | 0.1980 | |
| 7 | F | H | 1.0053 | |
| 1 | G | I | -0.7126 | |
| 2 | G | I | -1.1359 | |
| 3 | G | I | -1.5261 | |
| 4 | H | I | -2.0219 | |
| 5 | K | I | -1.3754 | |
| 6 | G | I | 0.1440 | |
| 7 | F | I | 1.7386 | |
| 1 | G | J | -0.6215 | |
| 2 | G | J | -0.9069 | |
| 3 | G | J | -1.1015 | |
| 4 | H | J | -1.6928 | |
| 5 | K | J | -0.8337 | |
| 6 | G | J | 0.4467 | |
| 7 | F | J | 1.6505 | |
| 1 | G | K | -1.0290 | |
| 2 | G | K | -1.2529 | |
| 3 | G | K | -1.1969 | |
| 4 | H | K | -1.4285 | |
| 5 | K | K | 0.0000 | |
| 6 | G | K | 0.3204 | |
| 7 | F | K | 1.0328 | |
| 1 | G | L | -0.9893 | |
| 2 | G | L | -1.2301 | |
| 3 | G | L | 0.0000 | |
| 4 | H | L | -1.7297 | |
| 5 | K | L | 0.0000 | |
| 6 | G | L | -0.1424 | |
| 7 | F | L | 0.5540 |