Project name: query_structure

Status: done

Started: 2026-03-17 00:17:39
Settings
Chain sequence(s) A: PPINMANMAPPINMACMNPINMANMANPINMACM
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:13)
Show buried residues

Minimal score value
-0.696
Maximal score value
2.1811
Average score
0.7303
Total score value
24.8287

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 P A 0.1887
2 P A 0.3272
3 I A 1.3285
4 N A -0.0719
5 M A 0.9234
6 A A 0.4784
7 N A -0.3558
8 M A 0.7512
9 A A 0.6480
10 P A 0.3806
11 P A 0.5518
12 I A 1.9036
13 N A 0.2548
14 M A 1.1435
15 A A 1.1049
16 C A 1.0088
17 M A 0.3908
18 N A -0.6960
19 P A 0.2778
20 I A 0.9131
21 N A -0.5241
22 M A 0.4822
23 A A 0.1193
24 N A -0.0460
25 M A 0.9170
26 A A 0.5677
27 N A 0.4161
28 P A 0.8553
29 I A 2.1811
30 N A 1.2666
31 M A 1.7890
32 A A 1.6347
33 C A 1.8784
34 M A 1.8400
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Laboratory of Theory of Biopolymers 2018