Project name: KGHKGHG20

Status: done

Started: 2026-05-21 14:36:01
Settings
Chain sequence(s) A: KGHKGHG
C: KGHKGHG
B: KGHKGHG
E: KGHKGHG
D: KGHKGHG
G: KGHKGHG
F: KGHKGHG
I: KGHKGHG
H: KGHKGHG
K: KGHKGHG
J: KGHKGHG
M: KGHKGHG
L: KGHKGHG
O: KGHKGHG
N: KGHKGHG
Q: KGHKGHG
P: KGHKGHG
S: KGHKGHG
R: KGHKGHG
T: KGHKGHG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:01)
Show buried residues

Minimal score value
-3.9798
Maximal score value
0.0
Average score
-2.3789
Total score value
-333.0395

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.1942
2 G A -2.5826
3 H A -2.7314
4 K A -2.9300
5 G A -2.8346
6 H A -2.1285
7 G A -1.6190
1 K B -3.2865
2 G B -2.9323
3 H B -3.3791
4 K B -3.3234
5 G B 0.0000
6 H B 0.0000
7 G B 0.0000
1 K C -3.1441
2 G C -3.0098
3 H C -3.2384
4 K C -3.2899
5 G C -2.8311
6 H C -2.4864
7 G C 0.0000
1 K D -3.5506
2 G D -3.3905
3 H D -3.4777
4 K D 0.0000
5 G D -2.8494
6 H D -1.9587
7 G D 0.0000
1 K E -2.5256
2 G E -2.7571
3 H E -2.9442
4 K E -3.9798
5 G E 0.0000
6 H E -2.4460
7 G E -2.1010
1 K F -2.8416
2 G F -3.0499
3 H F 0.0000
4 K F -3.3539
5 G F -2.6713
6 H F -2.3369
7 G F -1.5797
1 K G -2.4090
2 G G -2.8152
3 H G -3.0264
4 K G -3.4198
5 G G -2.9033
6 H G -2.7644
7 G G 0.0000
1 K H -2.8460
2 G H -3.0657
3 H H -3.6011
4 K H -3.9452
5 G H -3.2630
6 H H -2.8503
7 G H -2.3333
1 K I -3.2882
2 G I -3.3043
3 H I -3.5434
4 K I -3.9505
5 G I -3.3620
6 H I -2.5051
7 G I 0.0000
1 K J -2.2853
2 G J -2.7395
3 H J -3.1200
4 K J -3.1415
5 G J -2.7073
6 H J -2.3911
7 G J 0.0000
1 K K -2.4833
2 G K -2.0451
3 H K -2.4784
4 K K -3.1821
5 G K -2.4240
6 H K -2.2336
7 G K -1.9399
1 K L -2.4225
2 G L -2.4823
3 H L -2.6954
4 K L -2.4907
5 G L -2.0364
6 H L -1.9869
7 G L -2.1389
1 K M -2.7638
2 G M -2.5704
3 H M -2.6125
4 K M -2.8842
5 G M 0.0000
6 H M -2.4622
7 G M 0.0000
1 K N -2.9451
2 G N -3.3980
3 H N -3.5438
4 K N -3.8970
5 G N 0.0000
6 H N -2.2163
7 G N -2.3471
1 K O -2.6282
2 G O -2.7345
3 H O -2.7217
4 K O -3.1584
5 G O -2.4399
6 H O -2.5625
7 G O -2.3348
1 K P -2.7501
2 G P -3.2272
3 H P -3.4787
4 K P -3.3478
5 G P 0.0000
6 H P -2.3784
7 G P 0.0000
1 K Q -2.9104
2 G Q -3.2109
3 H Q -3.6517
4 K Q -3.4488
5 G Q -2.5004
6 H Q 0.0000
7 G Q -1.3320
1 K R -2.3296
2 G R -2.9720
3 H R -3.0530
4 K R -3.4013
5 G R 0.0000
6 H R 0.0000
7 G R -1.5767
1 K S -3.1070
2 G S -3.1172
3 H S -2.8751
4 K S -2.9898
5 G S -2.5920
6 H S -2.2071
7 G S 0.0000
1 K T -2.7284
2 G T -3.1920
3 H T -3.0201
4 K T -3.2644
5 G T 0.0000
6 H T -2.2107
7 G T -1.5707
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018