Project name: JFL2

Status: done

Started: 2026-07-29 03:39:56
Settings
Chain sequence(s) A: KVYVSYSVFAAIGETEPQTVRFENAQGVEREATISNGEVVGFVVVSTEDGEVLEVEERHIQVPESETRAAQAALTEELKKKVLERYKEYQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:25)
Show buried residues

Minimal score value
-3.7208
Maximal score value
0.7096
Average score
-1.4107
Total score value
-126.9635

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.1905
2 V A -1.2926
3 Y A 0.1619
4 V A 0.0000
5 S A 0.0178
6 Y A -0.2321
7 S A -0.3630
8 V A 0.3007
9 F A 0.1946
10 A A -0.0407
11 A A 0.0000
12 I A -0.7596
13 G A -1.1335
14 E A -2.0206
15 T A -1.6813
16 E A -2.6473
17 P A -1.9444
18 Q A -1.9353
19 T A -1.5298
20 V A -1.5659
21 R A -3.5202
22 F A -2.7244
23 E A -3.3673
24 N A 0.0000
25 A A -0.8631
26 Q A -1.7017
27 G A -1.8560
28 V A -1.7079
29 E A -3.7208
30 R A -3.6236
31 E A -3.6109
32 A A 0.0000
33 T A -1.3362
34 I A 0.0000
35 S A -1.4958
36 N A -1.7282
37 G A 0.0000
38 E A -1.4278
39 V A 0.0000
40 V A 0.0000
41 G A 0.0000
42 F A 0.0000
43 V A 0.0000
44 V A 0.0000
45 V A 0.0000
46 S A 0.0000
47 T A -1.8801
48 E A -3.0728
49 D A -3.2767
50 G A -2.0284
51 E A -2.0819
52 V A 0.1067
53 L A 0.7096
54 E A -0.0195
55 V A -0.0648
56 E A -1.2298
57 E A -1.7932
58 R A -1.4725
59 H A -1.2929
60 I A -0.7541
61 Q A -1.6095
62 V A -1.6177
63 P A -1.5206
64 E A -2.4152
65 S A -1.8881
66 E A -2.8516
67 T A 0.0000
68 R A -2.5609
69 A A -1.5051
70 A A -1.6069
71 Q A -1.4245
72 A A -1.1460
73 A A -1.2669
74 L A 0.0000
75 T A -1.7245
76 E A -3.2066
77 E A -2.8320
78 L A 0.0000
79 K A -3.0508
80 K A -3.3457
81 K A -2.5685
82 V A -1.6697
83 L A -1.3591
84 E A -3.0427
85 R A -2.4322
86 Y A -1.5243
87 K A -2.9382
88 E A -2.8773
89 Y A -1.4344
90 Q A -2.0486
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018