Project name: SSNA1 [mutate: IT85A, LA92A, VA95A, VK16A, IT75A]

Status: done

Started: 2024-07-04 09:47:35
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Chain sequence(s) A: MTQQGAALQNYNNELVKCIEELCQKREELCRQIQEEEDEKQRLQNEVRQLTEKLARVNENLARKIASRNEFDRTIAETEAAYLKILESSQTLLSVLKREAGNLTKATAPDQKSSGGRDS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VA95A,IT75A,LA92A,VK16A,IT85A
Energy difference between WT (input) and mutated protein (by FoldX) 1.30024 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:01:04)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:34)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:33)
Show buried residues

Minimal score value
-5.71
Maximal score value
0.3055
Average score
-2.1833
Total score value
-259.8097

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3055
2 T A -0.5119
3 Q A -1.4152
4 Q A -1.3524
5 G A -0.9246
6 A A -0.9420
7 A A -0.7872
8 L A -0.3190
9 Q A -1.7910
10 N A -2.0248
11 Y A -0.7140
12 N A -1.9111
13 N A -2.8301
14 E A -2.9838
15 L A -1.8323
16 K A -3.0100 mutated: VK16A
17 K A -3.2906
18 C A -1.5641
19 I A -0.7522
20 E A -3.1789
21 E A -3.3535
22 L A -2.0464
23 C A -2.2258
24 Q A -3.6088
25 K A -4.0376
26 R A -3.9547
27 E A -3.7271
28 E A -3.5235
29 L A -1.5547
30 C A -1.7318
31 R A -3.7340
32 Q A -3.0395
33 I A -1.9947
34 Q A -3.8305
35 E A -5.0359
36 E A -5.7100
37 E A -5.6436
38 D A -5.2345
39 E A -5.6895
40 K A -5.6954
41 Q A -4.9885
42 R A -4.7992
43 L A -2.8355
44 Q A -3.1828
45 N A -3.7775
46 E A -3.1164
47 V A -1.0908
48 R A -2.9006
49 Q A -2.5380
50 L A -1.0174
51 T A -1.1956
52 E A -2.3019
53 K A -1.6169
54 L A -0.6039
55 A A -1.5761
56 R A -2.4961
57 V A -0.9328
58 N A -2.2320
59 E A -3.2205
60 N A -2.3150
61 L A -1.1883
62 A A -1.7772
63 R A -2.8773
64 K A -2.6691
65 I A -0.5090
66 A A -1.4825
67 S A -2.1144
68 R A -2.8773
69 N A -2.8075
70 E A -2.8148
71 F A -1.1848
72 D A -3.1133
73 R A -3.4276
74 T A -2.2980
75 T A -2.0026 mutated: IT75A
76 A A -2.2470
77 E A -2.6702
78 T A -1.7664
79 E A -2.1545
80 A A -1.2713
81 A A -0.6770
82 Y A 0.0879
83 L A -0.1651
84 K A -1.7546
85 T A -0.8029 mutated: IT85A
86 L A -0.3730
87 E A -2.0977
88 S A -1.3613
89 S A -0.9785
90 Q A -1.4449
91 T A -0.6146
92 A A -0.2287 mutated: LA92A
93 L A -0.1347
94 S A -0.8289
95 A A -0.9240 mutated: VA95A
96 L A -0.7296
97 K A -2.3465
98 R A -3.1740
99 E A -2.9772
100 A A -1.8489
101 G A -2.1844
102 N A -2.4260
103 L A -0.5786
104 T A -1.0412
105 K A -1.8872
106 A A -0.8201
107 T A -0.6298
108 A A -1.0850
109 P A -1.9013
110 D A -3.0624
111 Q A -3.0726
112 K A -3.1385
113 S A -1.9739
114 S A -1.5314
115 G A -1.8123
116 G A -2.3143
117 R A -3.1441
118 D A -3.0233
119 S A -1.6173
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Laboratory of Theory of Biopolymers 2018