Project name: query_structure

Status: done

Started: 2026-03-17 01:13:59
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDAPFQTIQYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTLCARCSKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:40)
Show buried residues

Minimal score value
-3.6376
Maximal score value
1.8522
Average score
-0.5962
Total score value
-54.2566

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.8522
2 S A 0.2026
3 D A -0.3743
4 V A -0.9352
5 P A 0.0000
6 R A -3.6064
7 D A -3.6376
8 L A 0.0000
9 E A -2.2079
10 V A 0.0698
11 V A 1.5213
12 A A 0.8787
13 A A 0.2850
14 T A -0.5488
15 P A -1.1549
16 T A -1.0174
17 S A -0.5511
18 L A 0.0000
19 L A 0.7044
20 I A 0.0000
21 S A -1.2041
22 W A 0.0000
23 D A -3.1888
24 A A -1.4073
25 P A 0.0814
26 F A 1.7850
27 Q A 0.8141
28 T A 0.4623
29 I A 0.0639
30 Q A -0.5413
31 Y A -0.2689
32 Y A 0.0000
33 R A -0.8404
34 I A 0.0000
35 T A -0.5409
36 Y A -0.2379
37 G A 0.0000
38 E A -1.5065
39 T A -1.2356
40 G A -1.2278
41 G A -1.3367
42 N A -1.5172
43 S A -0.8084
44 P A -0.2871
45 V A 0.4840
46 Q A -0.7594
47 E A -1.6307
48 F A -0.7555
49 T A -0.3317
50 V A 0.0000
51 P A -0.9523
52 G A -1.0484
53 S A -1.2229
54 K A -2.0254
55 S A -1.4299
56 T A -0.7943
57 A A 0.0000
58 T A 0.2244
59 I A 0.0000
60 S A -0.6680
61 G A -1.0341
62 L A 0.0000
63 K A -2.3693
64 P A -1.6604
65 G A -1.4345
66 V A -1.4229
67 D A -2.0934
68 Y A 0.0000
69 T A -0.7822
70 I A 0.0000
71 T A -0.1169
72 V A 0.0000
73 Y A 0.1214
74 A A 0.0000
75 V A 0.0742
76 T A 0.5061
77 L A 1.4545
78 C A 0.7990
79 A A -0.0152
80 R A -1.3854
81 C A -0.5170
82 S A -0.9608
83 K A -1.7673
84 P A -0.6112
85 I A -0.4869
86 S A -0.4159
87 I A -0.4967
88 N A -1.7237
89 Y A -1.4816
90 R A -2.5450
91 T A -1.5195
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Laboratory of Theory of Biopolymers 2018