Project name: query_structure

Status: done

Started: 2026-03-16 20:29:32
Settings
Chain sequence(s) A: LPAPKNLVVSRITEDSARLSWKWEEGFFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVYQRHASAFVSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:06)
Show buried residues

Minimal score value
-3.1489
Maximal score value
1.9448
Average score
-0.7351
Total score value
-68.3646

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.1285
2 P A -0.0782
3 A A -0.6377
4 P A 0.0000
5 K A -2.0628
6 N A -1.6473
7 L A -0.3116
8 V A 1.1143
9 V A 0.7147
10 S A -0.5286
11 R A -1.7193
12 I A -0.7518
13 T A -1.5957
14 E A -2.6777
15 D A -2.4612
16 S A -1.8877
17 A A 0.0000
18 R A -1.1598
19 L A 0.0000
20 S A -0.6367
21 W A 0.0000
22 K A -2.9084
23 W A -2.5347
24 E A -2.7554
25 E A -3.1489
26 G A -1.6686
27 F A -0.6348
28 F A 0.0000
29 D A -2.2761
30 S A -0.9798
31 F A 0.0000
32 L A 0.8797
33 I A 0.0000
34 Q A 0.6727
35 Y A 0.4005
36 Q A -0.8041
37 E A -1.7746
38 S A -1.5334
39 E A -2.3735
40 K A -1.8637
41 V A 0.0398
42 G A -0.9092
43 E A -1.5340
44 A A -0.2559
45 I A 0.9870
46 V A 1.7994
47 L A 1.3069
48 T A 0.4713
49 V A 0.0000
50 P A -1.1269
51 G A -1.7164
52 S A -1.7904
53 E A -1.7810
54 R A -1.5404
55 S A -0.8727
56 Y A -0.7477
57 D A -1.6348
58 L A 0.0000
59 T A -1.3825
60 G A -1.4283
61 L A 0.0000
62 K A -2.9256
63 P A -2.4556
64 G A -1.8204
65 T A -2.2252
66 E A -1.9887
67 Y A 0.0000
68 T A -0.0033
69 V A 0.0000
70 S A 0.2377
71 I A 0.0000
72 Y A 0.5349
73 G A 0.0000
74 V A 0.3986
75 Y A -0.3147
76 Q A -2.0055
77 R A -2.7820
78 H A -2.1037
79 A A -1.1544
80 S A -0.9665
81 A A -0.3058
82 F A 1.3215
83 V A 1.9448
84 S A 0.0000
85 N A -0.7586
86 P A -0.4372
87 L A -0.5029
88 S A 0.1625
89 A A 1.1952
90 I A 1.7966
91 F A 0.0000
92 T A -0.7906
93 T A -1.7982
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Laboratory of Theory of Biopolymers 2018