Project name: 7b7425c7c85b6b7

Status: done

Started: 2026-06-22 16:06:17
Settings
Chain sequence(s) B: LAAMEEMMARMEKRAEIMLKMAELASPEVVEKAKKEIEKMRERFAEMVAA
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:26)
Show buried residues

Minimal score value
-4.891
Maximal score value
1.0886
Average score
-1.8826
Total score value
-94.1295

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L B 1.0886
2 A B -0.0493
3 A B -0.2161
4 M B -0.2725
5 E B -1.8898
6 E B -2.2703
7 M B -1.3628
8 M B -1.8816
9 A B -2.5798
10 R B -3.6771
11 M B -2.9235
12 E B -3.5085
13 K B -3.7980
14 R B -3.4696
15 A B 0.0000
16 E B -2.8391
17 I B -0.7108
18 M B -0.4232
19 L B -0.9516
20 K B -0.8471
21 M B 0.8510
22 A B 0.0000
23 E B -1.1732
24 L B 0.8955
25 A B 0.2420
26 S B -0.8223
27 P B -1.7631
28 E B -2.9275
29 V B -1.5732
30 V B -2.4858
31 E B -4.1959
32 K B -4.2379
33 A B 0.0000
34 K B -4.3574
35 K B -4.6758
36 E B -4.7311
37 I B 0.0000
38 E B -4.8910
39 K B -4.4458
40 M B -3.5020
41 R B -3.8878
42 E B -4.4474
43 R B -3.8532
44 F B 0.0000
45 A B -1.9628
46 E B -2.5039
47 M B -0.7105
48 V B -0.0767
49 A B -0.2972
50 A B -0.0144
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018