Project name: REST_test

Status: done

Started: 2025-03-09 19:54:34
Settings
Chain sequence(s) A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues FR19A
Energy difference between WT (input) and mutated protein (by FoldX) -0.872212 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:35)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:48)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:00)
Show buried residues

Minimal score value
-1.9366
Maximal score value
2.2646
Average score
-0.0691
Total score value
-2.9019

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.7839
2 A A -0.6418
3 E A -1.4533
4 F A 1.2594
5 R A -1.6672
6 H A -1.6536
7 D A -1.8959
8 S A -0.6981
9 G A -0.2605
10 Y A 0.9951
11 E A -0.3034
12 V A 1.4787
13 H A -0.6828
14 H A -1.1108
15 Q A -0.7473
16 K A -1.6371
17 L A 0.9853
18 V A 0.0476
19 R A -1.4415 mutated: FR19A
20 F A 1.7366
21 A A 0.2389
22 E A -1.7305
23 D A -1.8389
24 V A 0.4241
25 G A -0.3566
26 S A -0.5076
27 N A -1.6352
28 K A -1.9366
29 G A -0.3906
30 A A 0.1059
31 I A 1.5051
32 I A 2.1379
33 G A 0.4386
34 L A 1.4920
35 M A 0.6881
36 V A 1.6577
37 G A -0.2065
38 G A -0.0916
39 V A 1.9273
40 V A 1.9535
41 I A 2.2646
42 A A 0.4330
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Laboratory of Theory of Biopolymers 2018