Project name: query_structure

Status: done

Started: 2025-11-29 10:17:54
Settings
Chain sequence(s) A: MEMKNMVVGLFLIAAFALPALATNFEKDFITHETVQAILKKVGPSSNGMLDEQTISALTGKTIISNPVLEEALLTHSNSINALGGTLPCGESCVWIPCISSVVGCSCKSKVCYKNSLA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:06)
Show buried residues

Minimal score value
-2.3435
Maximal score value
4.6578
Average score
0.3691
Total score value
43.5493

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.1127
2 E A -1.3177
3 M A -0.1506
4 K A -1.3034
5 N A -0.8495
6 M A 1.0566
7 V A 2.0435
8 V A 2.6815
9 G A 2.5740
10 L A 4.0641
11 F A 4.6578
12 L A 4.0840
13 I A 4.4917
14 A A 3.2968
15 A A 3.0203
16 F A 3.4799
17 A A 2.5414
18 L A 2.7901
19 P A 1.4822
20 A A 1.2890
21 L A 1.8280
22 A A 0.8978
23 T A -0.0472
24 N A -0.5658
25 F A 0.0410
26 E A -2.2305
27 K A -2.3435
28 D A -1.3738
29 F A 1.3196
30 I A 1.5003
31 T A -0.0343
32 H A -1.2441
33 E A -1.9376
34 T A -0.4770
35 V A -0.1267
36 Q A -1.3770
37 A A -0.6274
38 I A 1.0560
39 L A 1.0249
40 K A -1.0876
41 K A -0.8539
42 V A 1.0145
43 G A -0.1716
44 P A -0.7174
45 S A -1.0015
46 S A -0.8362
47 N A -1.1233
48 G A -0.4366
49 M A 0.2079
50 L A 0.2444
51 D A -1.8824
52 E A -2.2700
53 Q A -1.9516
54 T A -0.4981
55 I A 0.2985
56 S A -0.6814
57 A A -0.2888
58 L A 1.0759
59 T A 0.4023
60 G A -0.4298
61 K A -0.8003
62 T A 0.7975
63 I A 2.5608
64 I A 2.4272
65 S A 0.9940
66 N A 0.0554
67 P A -0.2563
68 V A 0.8200
69 L A 0.8907
70 E A -0.7865
71 E A -1.0817
72 A A 0.1367
73 L A 0.9338
74 L A 0.7492
75 T A -0.3325
76 H A -0.8330
77 S A -0.6243
78 N A -1.4587
79 S A -0.7831
80 I A 0.3402
81 N A -0.8336
82 A A 0.1189
83 L A 1.2576
84 G A 0.1528
85 G A 0.1022
86 T A 0.4511
87 L A 0.8646
88 P A 0.0214
89 C A 0.1917
90 G A -0.4291
91 E A -0.0027
92 S A 0.2256
93 C A 0.8965
94 V A 1.3227
95 W A 2.1999
96 I A 2.5752
97 P A 1.3959
98 C A 0.0000
99 I A 2.6872
100 S A 1.7465
101 S A 1.4862
102 V A 2.8222
103 V A 2.3228
104 G A 0.4534
105 C A 0.0000
106 S A -0.1840
107 C A -0.5782
108 K A -1.0936
109 S A -1.1527
110 K A -1.1778
111 V A -0.6350
112 C A 0.0000
113 Y A -0.4679
114 K A -0.7320
115 N A -0.9838
116 S A -0.4562
117 L A 0.7520
118 A A 0.3654
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018