Project name: N-protein

Status: done

Started: 2026-04-09 12:21:59
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Chain sequence(s) A: QPQKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPFIAI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:45)
Show buried residues

Minimal score value
-4.325
Maximal score value
2.4135
Average score
-1.0579
Total score value
-115.316

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.7683
2 P A -1.7206
3 Q A -2.8952
4 K A -3.2755
5 C A 0.0000
6 Q A -3.1644
7 R A -4.3250
8 E A -3.9113
9 F A 0.0000
10 Q A -3.7508
11 Q A -3.8618
12 E A -4.0491
13 Q A -3.6665
14 H A -2.7475
15 L A 0.0000
16 R A -2.8771
17 A A -2.2937
18 C A 0.0000
19 Q A -1.9198
20 Q A -2.0673
21 W A 0.0000
22 I A 0.0000
23 R A -1.6007
24 Q A -1.5314
25 Q A -1.2742
26 L A -0.9725
27 A A -0.6949
28 G A -0.6387
29 S A -0.2850
30 P A 0.0848
31 F A 0.8872
32 S A -0.9075
33 E A -2.3029
34 N A -2.3421
35 Q A -1.8822
36 W A -0.1427
37 G A -1.0110
38 P A -1.0730
39 Q A -1.7357
40 Q A -1.5261
41 G A -1.3821
42 P A -1.6057
43 S A -1.3791
44 L A -1.7766
45 R A -2.3655
46 E A -2.7627
47 Q A -2.5979
48 C A 0.0000
49 C A 0.0000
50 N A -2.1923
51 E A -1.8672
52 L A 0.0000
53 Y A -0.8875
54 Q A -1.6911
55 E A -1.4613
56 D A -1.8135
57 Q A -1.0639
58 V A 0.1558
59 C A -0.9964
60 V A 0.0000
61 C A -0.2733
62 P A -0.5273
63 T A 0.0000
64 L A 0.0000
65 K A -0.5310
66 Q A -1.1122
67 A A 0.0000
68 A A 0.0000
69 K A -0.8382
70 S A -0.8145
71 V A 0.0000
72 R A -1.2629
73 V A 0.1639
74 Q A -1.1668
75 G A -1.2225
76 Q A -1.4459
77 H A -0.9052
78 G A -0.1761
79 P A 0.2709
80 F A 1.2855
81 Q A -0.4329
82 S A 0.0000
83 T A 0.1644
84 R A -1.1688
85 I A 0.0000
86 Y A 0.0000
87 Q A -1.3069
88 I A 0.0000
89 A A 0.0000
90 K A -1.2511
91 N A -1.4651
92 L A 0.0000
93 P A 0.0000
94 N A -2.4378
95 V A -1.4019
96 C A 0.0000
97 N A -2.2640
98 M A 0.0000
99 K A -2.9373
100 Q A -2.3816
101 I A -1.2617
102 G A -1.8353
103 T A -1.0897
104 C A 0.0000
105 P A 0.1062
106 F A 0.9757
107 I A 2.3127
108 A A 1.4307
109 I A 2.4135
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Laboratory of Theory of Biopolymers 2018