Project name: P2D6

Status: done

Started: 2026-06-05 02:51:34
Settings
Chain sequence(s) H: QVQLQQSGAEFLKPGASVKLSCKASGYTFTNYWMHWVKQRPGRGLEWIGRIDPDNGETNYNEKFKTKATLTVDNPSSTAYMQLSSLTSDDSAVYYCARRAYYSRNALDYWGQGTSVTVSS
L: DIVLTQSPASLAVSLGQRATISCRASESVDNYGISFMHWYQQKPGQPPKLLIYRASNLDSGIPARFSGSGSRTDFTLTINPVETDDVATYYCQQNNKDPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:29)
Show buried residues

Minimal score value
-3.4266
Maximal score value
1.5699
Average score
-0.6663
Total score value
-153.912

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5170
2 V H -1.0806
3 Q H -1.8159
4 L H 0.0000
5 Q H -2.0875
6 Q H 0.0000
7 S H -0.9702
8 G H -0.6641
9 A H 0.0860
11 E H 0.4059
12 F H 1.4383
13 L H 0.0719
14 K H -1.5770
15 P H -1.3731
16 G H -1.1496
17 A H -0.8930
18 S H -0.8811
19 V H -0.5423
20 K H -1.1545
21 L H 0.0000
22 S H -0.6108
23 C H 0.0000
24 K H -1.5165
25 A H 0.0000
26 S H -1.1801
27 G H -1.0528
28 Y H -0.5777
29 T H -0.4496
30 F H 0.0000
35 T H -1.4943
36 N H -1.1178
37 Y H -0.1414
38 W H -0.3642
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -1.0488
45 R H -1.6023
46 P H -1.1911
47 G H -1.5910
48 R H -2.5484
49 G H -1.6464
50 L H 0.0000
51 E H -1.3083
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 R H -0.6172
56 I H 0.0000
57 D H -1.6425
58 P H 0.0000
59 D H -2.9328
62 N H -2.5655
63 G H -1.8490
64 E H -1.8644
65 T H -1.0047
66 N H -1.4237
67 Y H -1.6765
68 N H -2.4913
69 E H -3.4266
70 K H -3.1154
71 F H 0.0000
72 K H -2.9783
74 T H -1.6072
75 K H -1.4161
76 A H 0.0000
77 T H -0.7448
78 L H 0.0000
79 T H -0.2041
80 V H -0.4040
81 D H -0.8613
82 N H -1.3401
83 P H -0.6507
84 S H -0.6462
85 S H -0.6899
86 T H 0.0000
87 A H 0.0000
88 Y H -0.1458
89 M H 0.0000
90 Q H -0.9892
91 L H 0.0000
92 S H -0.6523
93 S H -0.7582
94 L H 0.0000
95 T H -1.2493
96 S H -1.4452
97 D H -1.9715
98 D H 0.0000
99 S H -0.5884
100 A H 0.0000
101 V H -0.1397
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 R H 0.0557
108 A H 0.5256
109 Y H 1.5670
110 Y H 1.5699
111 S H 0.4366
112 R H -0.2478
113 N H 0.0640
114 A H 0.0000
115 L H 0.0000
116 D H -0.5784
117 Y H -0.1567
118 W H -0.7308
119 G H 0.0000
120 Q H -1.8984
121 G H -1.0919
122 T H 0.0000
123 S H -0.1381
124 V H 0.0000
125 T H 0.0628
126 V H 0.0000
127 S H -0.5271
128 S H -0.6950
1 D L -1.8128
2 I L 0.0000
3 V L 0.7344
4 L L 0.0000
5 T L -0.6095
6 Q L -0.7069
7 S L -0.7370
8 P L -0.3913
9 A L -0.4243
10 S L -0.7199
11 L L -0.4941
12 A L -0.6628
13 V L 0.0000
14 S L -1.2103
15 L L -0.4329
16 G L -1.3821
17 Q L -2.4748
18 R L -2.8504
19 A L 0.0000
20 T L -0.6390
21 I L 0.0000
22 S L -0.8480
23 C L 0.0000
24 R L -2.3468
25 A L 0.0000
26 S L -0.9053
27 E L -1.5476
28 S L -1.8910
29 V L 0.0000
30 D L -1.2267
31 N L -0.5974
34 Y L 0.8311
35 G L -0.1061
36 I L 0.0557
37 S L -0.6684
38 F L -0.6166
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.3846
46 P L -0.9536
47 G L -1.3955
48 Q L -2.1053
49 P L -1.4390
50 P L 0.0000
51 K L -1.7719
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.3086
56 R L -0.4186
57 A L 0.0000
65 S L -0.5049
66 N L -0.4027
67 L L 0.0778
68 D L -0.5023
69 S L -0.5283
70 G L -0.5733
71 I L 0.0000
72 P L -0.2746
74 A L -0.2385
75 R L -0.8588
76 F L 0.0000
77 S L -0.3909
78 G L -0.3830
79 S L -0.7213
80 G L -1.3864
83 S L -1.7436
84 R L -2.7726
85 T L -2.2022
86 D L -2.1990
87 F L 0.0000
88 T L -0.7337
89 L L 0.0000
90 T L 0.0000
91 I L 0.0000
92 N L -2.0791
93 P L -1.8527
94 V L 0.0000
95 E L -1.5989
96 T L -1.1804
97 D L -1.8120
98 D L 0.0000
99 V L -0.4370
100 A L 0.0000
101 T L -0.6725
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 N L 0.0000
108 N L -1.1734
109 K L -1.9675
114 D L -1.9948
115 P L -1.9911
116 W L 0.0000
117 T L -0.4983
118 F L 0.0000
119 G L 0.0000
120 G L -0.8577
121 G L -0.8997
122 T L 0.0000
123 K L -1.1565
124 L L 0.0000
125 E L -1.4909
126 I L -0.8394
127 K L -1.5941
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Laboratory of Theory of Biopolymers 2018