| Chain sequence(s) |
H: QVQLQQSGAEFLKPGASVKLSCKASGYTFTNYWMHWVKQRPGRGLEWIGRIDPDNGETNYNEKFKTKATLTVDNPSSTAYMQLSSLTSDDSAVYYCARRAYYSRNALDYWGQGTSVTVSS
L: DIVLTQSPASLAVSLGQRATISCRASESVDNYGISFMHWYQQKPGQPPKLLIYRASNLDSGIPARFSGSGSRTDFTLTINPVETDDVATYYCQQNNKDPWTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:28)
[INFO] Main: Simulation completed successfully. (00:01:29)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5170 | |
| 2 | V | H | -1.0806 | |
| 3 | Q | H | -1.8159 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.0875 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.9702 | |
| 8 | G | H | -0.6641 | |
| 9 | A | H | 0.0860 | |
| 11 | E | H | 0.4059 | |
| 12 | F | H | 1.4383 | |
| 13 | L | H | 0.0719 | |
| 14 | K | H | -1.5770 | |
| 15 | P | H | -1.3731 | |
| 16 | G | H | -1.1496 | |
| 17 | A | H | -0.8930 | |
| 18 | S | H | -0.8811 | |
| 19 | V | H | -0.5423 | |
| 20 | K | H | -1.1545 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.6108 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.5165 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.1801 | |
| 27 | G | H | -1.0528 | |
| 28 | Y | H | -0.5777 | |
| 29 | T | H | -0.4496 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.4943 | |
| 36 | N | H | -1.1178 | |
| 37 | Y | H | -0.1414 | |
| 38 | W | H | -0.3642 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -1.0488 | |
| 45 | R | H | -1.6023 | |
| 46 | P | H | -1.1911 | |
| 47 | G | H | -1.5910 | |
| 48 | R | H | -2.5484 | |
| 49 | G | H | -1.6464 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.3083 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | R | H | -0.6172 | |
| 56 | I | H | 0.0000 | |
| 57 | D | H | -1.6425 | |
| 58 | P | H | 0.0000 | |
| 59 | D | H | -2.9328 | |
| 62 | N | H | -2.5655 | |
| 63 | G | H | -1.8490 | |
| 64 | E | H | -1.8644 | |
| 65 | T | H | -1.0047 | |
| 66 | N | H | -1.4237 | |
| 67 | Y | H | -1.6765 | |
| 68 | N | H | -2.4913 | |
| 69 | E | H | -3.4266 | |
| 70 | K | H | -3.1154 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.9783 | |
| 74 | T | H | -1.6072 | |
| 75 | K | H | -1.4161 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.7448 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.2041 | |
| 80 | V | H | -0.4040 | |
| 81 | D | H | -0.8613 | |
| 82 | N | H | -1.3401 | |
| 83 | P | H | -0.6507 | |
| 84 | S | H | -0.6462 | |
| 85 | S | H | -0.6899 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.1458 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.9892 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.6523 | |
| 93 | S | H | -0.7582 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2493 | |
| 96 | S | H | -1.4452 | |
| 97 | D | H | -1.9715 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.5884 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.1397 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | R | H | 0.0557 | |
| 108 | A | H | 0.5256 | |
| 109 | Y | H | 1.5670 | |
| 110 | Y | H | 1.5699 | |
| 111 | S | H | 0.4366 | |
| 112 | R | H | -0.2478 | |
| 113 | N | H | 0.0640 | |
| 114 | A | H | 0.0000 | |
| 115 | L | H | 0.0000 | |
| 116 | D | H | -0.5784 | |
| 117 | Y | H | -0.1567 | |
| 118 | W | H | -0.7308 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.8984 | |
| 121 | G | H | -1.0919 | |
| 122 | T | H | 0.0000 | |
| 123 | S | H | -0.1381 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.0628 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.5271 | |
| 128 | S | H | -0.6950 | |
| 1 | D | L | -1.8128 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.7344 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.6095 | |
| 6 | Q | L | -0.7069 | |
| 7 | S | L | -0.7370 | |
| 8 | P | L | -0.3913 | |
| 9 | A | L | -0.4243 | |
| 10 | S | L | -0.7199 | |
| 11 | L | L | -0.4941 | |
| 12 | A | L | -0.6628 | |
| 13 | V | L | 0.0000 | |
| 14 | S | L | -1.2103 | |
| 15 | L | L | -0.4329 | |
| 16 | G | L | -1.3821 | |
| 17 | Q | L | -2.4748 | |
| 18 | R | L | -2.8504 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.6390 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.8480 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.3468 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -0.9053 | |
| 27 | E | L | -1.5476 | |
| 28 | S | L | -1.8910 | |
| 29 | V | L | 0.0000 | |
| 30 | D | L | -1.2267 | |
| 31 | N | L | -0.5974 | |
| 34 | Y | L | 0.8311 | |
| 35 | G | L | -0.1061 | |
| 36 | I | L | 0.0557 | |
| 37 | S | L | -0.6684 | |
| 38 | F | L | -0.6166 | |
| 39 | M | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.3846 | |
| 46 | P | L | -0.9536 | |
| 47 | G | L | -1.3955 | |
| 48 | Q | L | -2.1053 | |
| 49 | P | L | -1.4390 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.7719 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.3086 | |
| 56 | R | L | -0.4186 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.5049 | |
| 66 | N | L | -0.4027 | |
| 67 | L | L | 0.0778 | |
| 68 | D | L | -0.5023 | |
| 69 | S | L | -0.5283 | |
| 70 | G | L | -0.5733 | |
| 71 | I | L | 0.0000 | |
| 72 | P | L | -0.2746 | |
| 74 | A | L | -0.2385 | |
| 75 | R | L | -0.8588 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3909 | |
| 78 | G | L | -0.3830 | |
| 79 | S | L | -0.7213 | |
| 80 | G | L | -1.3864 | |
| 83 | S | L | -1.7436 | |
| 84 | R | L | -2.7726 | |
| 85 | T | L | -2.2022 | |
| 86 | D | L | -2.1990 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7337 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | 0.0000 | |
| 91 | I | L | 0.0000 | |
| 92 | N | L | -2.0791 | |
| 93 | P | L | -1.8527 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.5989 | |
| 96 | T | L | -1.1804 | |
| 97 | D | L | -1.8120 | |
| 98 | D | L | 0.0000 | |
| 99 | V | L | -0.4370 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.6725 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | N | L | 0.0000 | |
| 108 | N | L | -1.1734 | |
| 109 | K | L | -1.9675 | |
| 114 | D | L | -1.9948 | |
| 115 | P | L | -1.9911 | |
| 116 | W | L | 0.0000 | |
| 117 | T | L | -0.4983 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.8577 | |
| 121 | G | L | -0.8997 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.1565 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.4909 | |
| 126 | I | L | -0.8394 | |
| 127 | K | L | -1.5941 |