Project name: CROSS_BETA_B

Status: done

Started: 2024-06-11 10:55:28
Settings
Chain sequence(s) a: HLCGSHLVEALYLVCGERGFFYT
A: QCCTSICSLYQLENYC
c: HLCGSHLVEALYLVCGERGFFYT
e: HLCGSHLVEALYLVCGERGFFYT
G: QCCTSICSLYQLENYC
g: HLCGSHLVEALYLVCGERGFFYT
i: HLCGSHLVEALYLVCGERGFFYT
m: HLCGSHLVEALYLVCGERGFFYT
k: HLCGSHLVEALYLVCGERGFFYT
M: QCCTSICSLYQLENYC
C: QCCTSICSLYQLENYC
o: HLCGSHLVEALYLVCGERGFFYT
I: QCCTSICSLYQLENYC
O: QCCTSICSLYQLENYC
E: QCCTSICSLYQLENYC
K: QCCTSICSLYQLENYC
input PDB
Selected Chain(s) a,A,c,e,G,g,i,M,k,m,C,o,I,O,E,K
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:28)
Show buried residues

Minimal score value
-3.0049
Maximal score value
2.3057
Average score
-0.0299
Total score value
-9.3275

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
5 H o -1.7012
6 L o 0.0000
7 C o 0.0000
8 G o -1.0130
9 S o -0.8827
10 H o -1.0265
11 L o 0.0000
12 V o 0.9339
13 E o 0.0000
14 A o 0.7627
15 L o 0.0000
16 Y o 1.4157
17 L o 0.0000
18 V o 1.0604
19 C o 0.0000
20 G o -1.3428
21 E o -2.4877
22 R o -2.3687
23 G o -0.7030
24 F o 1.2614
25 F o 0.0000
26 Y o 1.7904
27 T o 0.7718
5 H m -1.2465
6 L m -0.3070
7 C m -0.2724
8 G m -0.7325
9 S m -0.7055
10 H m -0.8445
11 L m 0.3710
12 V m 1.5100
13 E m 0.6190
14 A m 0.7949
15 L m 1.0868
16 Y m 2.0229
17 L m 0.0000
18 V m 1.8639
19 C m 0.0000
20 G m -1.2270
21 E m -3.0049
22 R m -2.8564
23 G m -0.9230
24 F m 1.7695
25 F m 1.6795
26 Y m 2.3057
27 T m 1.0965
5 H k -1.6739
6 L k 0.0000
7 C k 0.0000
8 G k 0.0000
9 S k -0.7143
10 H k -1.1120
11 L k 0.0000
12 V k 0.5668
13 E k 0.0000
14 A k 0.4191
15 L k 0.0000
16 Y k 0.7811
17 L k 0.0000
18 V k 0.7896
19 C k 0.0000
20 G k 0.0000
21 E k -1.4780
22 R k -1.2288
23 G k -0.2892
24 F k 0.9085
25 F k 0.0000
26 Y k 1.1194
27 T k 0.4284
5 H i -1.8066
6 L i -1.0878
7 C i 0.0000
8 G i -1.0290
9 S i -0.7166
10 H i -1.0093
11 L i 0.0000
12 V i 0.7166
13 E i 0.0000
14 A i 0.4209
15 L i 0.0000
16 Y i 0.8702
17 L i 0.0000
18 V i 0.8580
19 C i 0.0000
20 G i 0.0000
21 E i -1.7019
22 R i -1.6264
23 G i -0.4019
24 F i 0.9737
25 F i 0.0000
26 Y i 1.2078
27 T i 0.4314
5 H g -1.8325
6 L g 0.0000
7 C g 0.0000
8 G g -0.9643
9 S g -0.6053
10 H g -0.9063
11 L g 0.0000
12 V g 0.6189
13 E g 0.0000
14 A g 0.3797
15 L g 0.0000
16 Y g 0.9755
17 L g 0.0000
18 V g 0.8939
19 C g 0.0000
20 G g -0.9716
21 E g -2.2338
22 R g -2.0560
23 G g 0.0000
24 F g 0.8727
25 F g 0.0000
26 Y g 1.1778
27 T g 0.4922
5 H e -1.8716
6 L e 0.0000
7 C e 0.0000
8 G e 0.0000
9 S e -0.7220
10 H e -1.0725
11 L e 0.0000
12 V e 0.6549
13 E e 0.0000
14 A e 0.4672
15 L e 0.0000
16 Y e 0.8231
17 L e 0.0000
18 V e 0.7874
19 C e 0.0000
20 G e -0.8016
21 E e -1.7263
22 R e -1.4568
23 G e -0.4675
24 F e 0.8168
25 F e 0.0000
26 Y e 1.1076
27 T e 0.4248
5 H c -1.1547
6 L c -0.4748
7 C c -0.3605
8 G c -0.7192
9 S c -0.6487
10 H c -0.8418
11 L c -0.1688
12 V c 0.2614
13 E c -0.8098
14 A c 0.0557
15 L c 1.1947
16 Y c 2.0493
17 L c 2.0588
18 V c 1.8400
19 C c 0.5901
20 G c -1.2655
21 E c -2.7123
22 R c -2.7290
23 G c -0.4712
24 F c 1.9900
25 F c 1.6435
26 Y c 2.2112
27 T c 0.9787
5 H a -1.5899
6 L a 0.0000
7 C a 0.0000
8 G a 0.0000
9 S a -0.6043
10 H a -0.6990
11 L a 0.0000
12 V a 0.3437
13 E a 0.0000
14 A a 0.3263
15 L a 0.0000
16 Y a 1.5560
17 L a 0.0000
18 V a 1.3997
19 C a 0.0000
20 G a -1.2983
21 E a -2.6251
22 R a -2.3393
23 G a -0.7596
24 F a 1.1122
25 F a 0.0000
26 Y a 1.6914
27 T a 0.7046
5 Q O -2.0389
6 C O 0.0000
7 C O 0.0000
8 T O 0.0000
9 S O 0.0000
10 I O 0.0000
11 C O 0.0000
12 S O -0.1031
13 L O 0.0000
14 Y O 0.9642
15 Q O -0.0359
16 L O 0.0000
17 E O -0.8659
18 N O 0.0000
19 Y O 1.0825
20 C O 0.7725
5 Q M -1.5595
6 C M -0.4770
7 C M -0.0884
8 T M 0.5531
9 S M 0.3484
10 I M 0.6921
11 C M 0.4826
12 S M 0.2471
13 L M 1.1205
14 Y M 1.3717
15 Q M -0.1749
16 L M -0.5988
17 E M -1.6802
18 N M 0.1282
19 Y M 1.4195
20 C M 1.3582
5 Q K -1.7074
6 C K 0.0000
7 C K 0.0000
8 T K 0.0000
9 S K 0.0000
10 I K 0.0000
11 C K 0.0000
12 S K -0.3733
13 L K 0.0000
14 Y K 0.6225
15 Q K -0.0130
16 L K 0.0000
17 E K -0.2865
18 N K 0.0000
19 Y K 0.8612
20 C K 0.5788
5 Q I -1.8340
6 C I 0.0000
7 C I 0.0000
8 T I 0.0000
9 S I 0.0000
10 I I 0.0000
11 C I 0.0000
12 S I -0.3963
13 L I 0.0000
14 Y I 0.7776
15 Q I -0.0576
16 L I 0.0000
17 E I -0.5569
18 N I 0.0000
19 Y I 0.9234
20 C I 0.5795
5 Q G -1.8045
6 C G 0.0000
7 C G 0.0000
8 T G 0.0000
9 S G 0.0000
10 I G 0.0000
11 C G 0.0000
12 S G -0.3822
13 L G 0.0000
14 Y G 0.6909
15 Q G -0.1295
16 L G 0.0000
17 E G -0.3800
18 N G 0.0000
19 Y G 1.0605
20 C G 0.7311
5 Q E -1.7252
6 C E 0.0000
7 C E 0.0000
8 T E 0.0000
9 S E 0.0000
10 I E 0.0000
11 C E 0.0000
12 S E -0.3884
13 L E 0.0000
14 Y E 0.6150
15 Q E 0.0028
16 L E 0.0000
17 E E 0.0000
18 N E 0.0000
19 Y E 0.9098
20 C E 0.6365
5 Q C -1.5075
6 C C -0.7362
7 C C 0.0000
8 T C 0.0519
9 S C 0.0138
10 I C 0.2578
11 C C -0.0232
12 S C 0.0162
13 L C 0.9117
14 Y C 1.1521
15 Q C -0.5439
16 L C -0.5334
17 E C -0.9692
18 N C 0.8031
19 Y C 1.8053
20 C C 1.2446
5 Q A -1.8604
6 C A 0.0000
7 C A 0.0000
8 T A 0.0000
9 S A 0.0000
10 I A 0.0000
11 C A 0.0000
12 S A -0.0350
13 L A 0.0000
14 Y A 0.7445
15 Q A -0.1888
16 L A 0.0000
17 E A -0.6069
18 N A 0.0000
19 Y A 1.1877
20 C A 0.9891
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Laboratory of Theory of Biopolymers 2018