Project name: query_structure

Status: done

Started: 2026-03-17 00:38:54
Settings
Chain sequence(s) A: ASVIKPEMKIKLRMEGAVNGHKFVIEGEGIGKPYEGTQTLDLTVEEGAPLPFSYDILTPAFYYYNRAFTKYPEDIPDYFKQAFPEGYSWERSMTYEDQGICIATSDITMEGDCFFYEIRFDGTNFPPNGPVMQKKTLKWEPSTEKMYVEDGVLKGDVEMALLLEGGGHYRCDFKTTYKKAKKDVVRLPDAHEVDHRRIEILSHDKDYNKVRLYEHAEARYS
C: ASVIKPEMKIKLRMMEGAVNGHKFVIEGEGIGKPYEGTQTLDLTVEEGAPLPFSYDILTPAFYYYNRAFTKYPEDIPDYFKQAFPEGYSWERSMTYEDQGICIATSDITMEGDCFFYEIRFDGTNFPPNGPVMQKKTTLKWEPSTEKMYVEDGVLKGDVEMALLLEGGGHYRCDFKTTYKAKKDVRLPDAHEVDHRIEILSHDKDYNKVRLYEHAEARYSGG
B: SQVQLVESSGGGLVQQAGGSLRRLSCAASGFPVGRASMWWYRQAPPGKEREWVAAISSYGWVTAYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYYCEVSSVGTGYRGQGTQVTTVSAG
D: VQLVESGGGLVQAGGSLRLSCAASGGFFPPVVGGRRASMMWWYRQAPGKERREWVAAISSYGWVTAYADSVKGRFTISRDDNNAAKKNNTTVYLQMNSLKPEDTAVYYCEVSSVGTGYRGQGTQVTVSAGRAGE
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:14:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:14:14)
Show buried residues

Minimal score value
-3.8543
Maximal score value
1.2253
Average score
-0.9241
Total score value
-617.2788

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 A A 0.0264
3 S A -0.0973
4 V A -0.2679
5 I A 0.0000
6 K A -1.7784
7 P A -1.4718
8 E A -2.4489
9 M A 0.0000
10 K A -2.7772
11 I A 0.0000
12 K A -2.3319
13 L A 0.0000
14 R A -2.3417
15 M A 0.0000
16 E A -2.0104
17 G A 0.0000
18 A A 0.0000
19 V A 0.0000
20 N A -1.2187
21 G A -1.3255
22 H A -1.4510
23 K A -2.4304
24 F A 0.0000
25 V A -2.0605
26 I A 0.0000
27 E A -2.6226
28 G A 0.0000
29 E A -3.0575
30 G A -1.9046
31 I A -1.5420
32 G A 0.0000
33 K A -1.2416
34 P A 0.0000
35 Y A -0.3444
36 E A -0.8507
37 G A 0.0000
38 T A 0.0000
39 Q A 0.0000
40 T A -0.8669
41 L A 0.0000
42 D A -2.7383
43 L A 0.0000
44 T A -2.2870
45 V A 0.0000
46 E A -3.1950
47 E A -3.1707
48 G A -1.9061
49 A A -1.5524
50 P A -1.3746
51 L A 0.0000
52 P A -0.8692
53 F A 0.0000
54 S A 0.0000
55 Y A 0.0000
56 D A -0.3844
57 I A 0.0000
58 L A 0.0000
59 T A 0.0000
60 P A -0.0667
61 A A 0.0000
62 F A 0.0000
66 N A -0.1872
67 R A 0.0000
68 A A 0.0000
69 F A 0.0000
70 T A 0.0000
71 K A -1.4811
72 Y A -1.4094
73 P A -1.7847
74 E A -2.8190
75 D A -2.6926
76 I A 0.0000
77 P A -1.6239
78 D A -1.1670
79 Y A 0.0000
80 F A 0.0000
81 K A -0.2654
82 Q A -1.2950
83 A A 0.0000
84 F A 0.0000
85 P A -1.3271
86 E A -2.0915
87 G A 0.0000
88 Y A 0.0000
89 S A -0.8811
90 W A 0.0000
91 E A 0.0000
92 R A 0.0000
93 S A 0.0000
94 M A 0.0000
95 T A -1.8120
96 Y A 0.0000
97 E A -3.0013
98 D A -2.0881
99 Q A -1.9082
100 G A 0.0000
101 I A 0.0000
102 C A 0.0000
103 I A 0.0000
104 A A 0.0000
105 T A 0.0000
106 S A 0.0000
107 D A -1.1761
108 I A 0.0000
109 T A -0.9980
110 M A -1.4745
111 E A -2.5432
112 G A -2.3340
113 D A -3.1272
114 C A -2.5245
115 F A 0.0000
116 F A -1.0676
117 Y A 0.0000
118 E A -2.5182
119 I A 0.0000
120 R A -1.3853
121 F A 0.0000
122 D A 0.0000
123 G A 0.0000
124 T A 0.0000
125 N A -1.1280
126 F A 0.0000
127 P A -1.1098
128 P A -1.1792
129 N A -1.9220
130 G A -1.4981
131 P A -1.7970
132 V A 0.0000
133 M A -1.4384
134 Q A -2.2318
135 K A -2.8323
136 K A -2.8016
137 T A -1.5302
138 L A -0.5901
139 K A -0.3347
140 W A 0.0000
141 E A -0.8606
142 P A -0.8676
143 S A -1.0800
144 T A -1.3707
145 E A 0.0000
146 K A -1.8602
147 M A 0.0000
148 Y A -0.7672
149 V A -0.8834
150 E A -2.4519
151 D A -2.7124
152 G A -1.8645
153 V A -1.1930
154 L A 0.0000
155 K A -1.2205
156 G A 0.0000
157 D A -2.2841
158 V A 0.0000
159 E A -3.1855
160 M A 0.0000
161 A A -1.7874
162 L A 0.0000
163 L A -0.9447
164 L A -1.5458
165 E A -2.6289
166 G A -1.7433
167 G A -1.3372
168 G A -1.3424
169 H A -1.4283
170 Y A 0.0000
171 R A -2.8510
172 C A 0.0000
173 D A -3.4563
174 F A 0.0000
175 K A -2.3168
176 T A 0.0000
177 T A 0.0000
178 Y A 0.0000
179 K A -1.3973
180 A A -2.1543
181 K A -3.2168
182 K A -3.5457
183 D A -3.2697
184 V A -2.2207
185 R A -2.1752
186 L A -0.9682
187 P A 0.0000
188 D A -1.5973
189 A A -0.8236
190 H A 0.0000
191 E A -1.3930
192 V A 0.0000
193 D A -1.5454
194 H A -1.0062
195 R A -0.7919
196 I A -0.2060
197 E A 0.0000
198 I A -0.0374
199 L A 0.0000
200 S A -1.2334
201 H A -2.2537
202 D A -2.6354
203 K A -3.1171
204 D A -3.0754
205 Y A -2.1159
206 N A -2.4824
207 K A -3.1864
208 V A 0.0000
209 R A -2.1079
210 L A 0.0000
211 Y A 0.0000
212 E A -0.2405
213 H A -0.8299
214 A A 0.0000
215 E A -1.7613
216 A A 0.0000
217 R A -1.0650
218 Y A -0.3187
219 S A -0.2023
0 S B -0.9092
1 Q B -1.5663
2 V B -1.0587
3 Q B -1.4648
4 L B 0.0000
5 V B 0.2185
6 E B 0.0000
7 S B -0.6724
8 G B -1.1566
9 G B -0.7488
10 G B 0.0828
11 L B 1.1461
12 V B 0.1220
13 Q B -1.2705
14 A B -1.5147
15 G B -1.3833
16 G B -0.8580
17 S B -1.1575
18 L B -0.8569
19 R B -2.0408
20 L B 0.0000
21 S B -0.3714
22 C B 0.0000
23 A B -0.1770
24 A B -0.5099
25 S B -0.7885
26 G B -0.7423
27 F B -0.3224
28 P B -0.2223
29 V B -0.1728
30 G B -0.7871
31 R B -0.9163
32 A B -0.4651
33 S B 0.0000
34 M B 0.0000
35 W B 0.0000
36 W B 0.0000
37 Y B 0.0000
38 R B 0.0000
39 Q B -2.1338
40 A B -2.0168
41 P B -1.4895
42 G B -2.0415
43 K B -3.4249
44 E B -3.7373
45 R B -3.1342
46 E B -2.2786
47 W B 0.0000
48 V B 0.0000
49 A B 0.0000
50 A B 0.0000
51 I B 0.0000
52 S B 0.0000
53 S B 0.0000
54 Y B -0.1522
55 G B -0.2902
56 W B 0.0562
57 V B 0.0000
58 T B -0.1415
59 A B 0.0000
60 Y B -0.9785
61 A B 0.0000
62 D B -2.5507
63 S B -1.7279
64 V B 0.0000
65 K B -2.5828
66 G B -1.7658
67 R B -1.6339
68 F B 0.0000
69 T B -0.7852
70 I B 0.0000
71 S B -0.4307
72 R B -1.0456
73 D B -1.6865
74 N B -1.8683
75 A B -1.3578
76 K B -1.9564
77 N B 0.0000
78 T B -0.7061
79 V B 0.0000
80 Y B -0.4213
81 L B 0.0000
82 Q B -1.0766
83 M B 0.0000
84 N B -1.4006
85 S B -1.2469
86 L B 0.0000
87 K B -2.3918
88 P B -1.8796
89 E B -2.3042
90 D B 0.0000
91 T B -0.8997
92 A B 0.0000
93 V B -0.5259
94 Y B 0.0000
95 Y B -0.5811
96 C B 0.0000
97 E B -0.4783
98 V B 0.0000
99 S B 0.0000
100 V B 0.0000
101 G B -1.0269
102 T B -0.6240
103 G B -0.5698
104 Y B -0.3632
105 R B -1.6058
106 G B 0.0000
107 Q B -1.4785
108 G B 0.0000
109 T B -0.7109
110 Q B -1.0951
111 V B 0.0000
112 T B -0.2862
113 V B 0.0000
114 S B -0.8278
115 A B -1.0436
116 G B -0.9600
2 A C -0.1471
3 S C -0.2222
4 V C -0.2063
5 I C 0.0000
6 K C -2.0358
7 P C -1.6511
8 E C -2.7067
9 M C 0.0000
10 K C -2.8515
11 I C 0.0000
12 K C -2.8202
13 L C 0.0000
14 R C -3.3563
15 M C 0.0000
16 E C -2.8542
17 G C 0.0000
18 A C 0.0000
19 V C 0.0000
20 N C -1.1618
21 G C -1.2088
22 H C -1.3899
23 K C -2.5089
24 F C 0.0000
25 V C -2.4690
26 I C 0.0000
27 E C -3.1108
28 G C 0.0000
29 E C -3.1953
30 G C -1.8273
31 I C -1.4458
32 G C 0.0000
33 K C -1.4111
34 P C 0.0000
35 Y C -0.4233
36 E C -0.6993
37 G C 0.0000
38 T C 0.0000
39 Q C 0.0000
40 T C 0.0000
41 L C 0.0000
42 D C -2.3512
43 L C 0.0000
44 T C -2.3295
45 V C 0.0000
46 E C -3.3489
47 E C -3.2570
48 G C -1.9034
49 A C -1.5516
50 P C -1.2509
51 L C 0.0000
52 P C -0.9696
53 F C 0.0000
54 S C 0.0000
55 Y C 0.0000
56 D C 0.0000
57 I C 0.0000
58 L C 0.0000
59 T C 0.0000
60 P C -0.0516
61 A C 0.0000
62 F C 0.0000
66 N C 0.0000
67 R C 0.0000
68 A C 0.0000
69 F C 0.0000
70 T C 0.0000
71 K C -1.4556
72 Y C -1.3669
73 P C -1.8427
74 E C -2.8360
75 D C -2.9092
76 I C 0.0000
77 P C -1.6642
78 D C -1.1582
79 Y C 0.0000
80 F C 0.0000
81 K C 0.0000
82 Q C -1.2484
83 A C 0.0000
84 F C 0.0000
85 P C -1.1790
86 E C -1.8084
87 G C 0.0000
88 Y C 0.0000
89 S C -0.9791
90 W C 0.0000
91 E C 0.0000
92 R C 0.0000
93 S C 0.0000
94 M C 0.0000
95 T C -1.8759
96 Y C 0.0000
97 E C -3.1772
98 D C -2.3258
99 Q C -1.9014
100 G C 0.0000
101 I C 0.0000
102 C C 0.0000
103 I C 0.0000
104 A C 0.0000
105 T C 0.0000
106 S C 0.0000
107 D C -1.0579
108 I C 0.0000
109 T C -0.9286
110 M C -1.3409
111 E C -2.3242
112 G C -1.9566
113 D C -2.3626
114 C C -2.3100
115 F C 0.0000
116 F C -1.4525
117 Y C 0.0000
118 E C -2.8583
119 I C 0.0000
120 R C -1.6933
121 F C 0.0000
122 D C 0.0000
123 G C 0.0000
124 T C 0.0000
125 N C -1.1154
126 F C 0.0000
127 P C -1.1274
128 P C -1.2510
129 N C -1.9863
130 G C 0.0000
131 P C -1.7676
132 V C 0.0000
133 M C -1.5655
134 Q C -2.5827
135 K C -2.7030
136 K C -2.4871
137 T C -1.2318
138 L C -0.1268
139 K C -0.1908
140 W C 0.0000
141 E C -0.8662
142 P C -0.7912
143 S C -1.0047
144 T C -1.3002
145 E C 0.0000
146 K C -1.8213
147 M C 0.0000
148 Y C -0.8978
149 V C -1.1321
150 E C -2.5627
151 D C -2.7983
152 G C -2.0757
153 V C 0.0000
154 L C 0.0000
155 K C -1.3840
156 G C 0.0000
157 D C -2.1967
158 V C 0.0000
159 E C -3.2633
160 M C 0.0000
161 A C -1.9728
162 L C 0.0000
163 L C -0.8391
164 L C -1.3324
165 E C -2.4157
166 G C -1.6430
167 G C -1.3125
168 G C -1.4320
169 H C -1.4873
170 Y C 0.0000
171 R C -3.4104
172 C C 0.0000
173 D C -3.5357
174 F C 0.0000
175 K C -2.1644
176 T C 0.0000
177 T C 0.0000
178 Y C 0.0000
179 K C -2.0080
180 A C -2.4068
181 K C -3.3404
182 K C -3.7079
183 D C -3.4560
184 V C -2.4259
185 R C -2.2306
186 L C -1.1162
187 P C 0.0000
188 D C -1.8290
189 A C -1.0698
190 H C 0.0000
191 E C -1.3602
192 V C 0.0000
193 D C -1.4583
194 H C -0.9205
195 R C -0.7572
196 I C -0.2757
197 E C -0.2123
198 I C -0.0312
199 L C 0.0000
200 S C -1.1217
201 H C -2.1822
202 D C -2.6221
203 K C -3.1716
204 D C -3.1800
205 Y C -2.2823
206 N C -2.6412
207 K C -3.1162
208 V C 0.0000
209 R C -1.5446
210 L C 0.0000
211 Y C 0.0000
212 E C -0.2914
213 H C -0.8433
214 A C 0.0000
215 E C -1.6181
216 A C 0.0000
217 R C -1.2371
218 Y C -0.6060
219 S C -0.6089
220 G C -0.7095
221 G C -0.6784
2 V D 0.9667
3 Q D -0.3383
4 L D 0.0000
5 V D 0.3181
6 E D 0.0000
7 S D -0.6589
8 G D -1.0582
9 G D -0.8067
10 G D -0.0128
11 L D 1.2253
12 V D 0.1889
13 Q D -1.3511
14 A D -1.8759
15 G D -1.4834
16 G D -1.0065
17 S D -1.2037
18 L D -1.0938
19 R D -2.2846
20 L D 0.0000
21 S D -0.4020
22 C D 0.0000
23 A D -0.1975
24 A D 0.0775
25 S D 0.0067
26 G D 0.2918
27 F D 0.4925
28 P D 0.2245
29 V D 0.6458
30 G D -0.5651
31 R D -1.5435
32 A D -0.6656
33 S D 0.0000
34 M D 0.0000
35 W D 0.0000
36 W D 0.0000
37 Y D 0.0000
38 R D -1.4795
39 Q D -2.3859
40 A D -2.1579
41 P D -1.5174
42 G D -2.0576
43 K D -3.4963
44 E D -3.8543
45 R D -3.4067
46 E D -2.3808
47 W D 0.0000
48 V D 0.0000
49 A D 0.0000
50 A D 0.0000
51 I D 0.0000
52 S D 0.0000
53 S D 0.0000
54 Y D -0.2093
55 G D -0.3497
56 W D 0.0061
57 V D 0.0000
58 T D -0.1267
59 A D 0.0000
60 Y D -0.9985
61 A D 0.0000
62 D D -2.6371
63 S D -1.8078
64 V D 0.0000
65 K D -2.6384
66 G D -1.8870
67 R D -1.6469
68 F D 0.0000
69 T D -1.0212
70 I D 0.0000
71 S D -0.4072
72 R D -0.8584
73 D D -1.2423
74 N D -1.3922
75 A D -0.9601
76 K D -1.7901
77 N D 0.0000
78 T D 0.0000
79 V D 0.0000
80 Y D -0.5102
81 L D 0.0000
82 Q D -1.6099
83 M D 0.0000
84 N D -2.1063
85 S D -1.3062
86 L D 0.0000
87 K D -2.3596
88 P D -1.6944
89 E D -2.2851
90 D D 0.0000
91 T D -1.0020
92 A D 0.0000
93 V D -0.7304
94 Y D 0.0000
95 Y D -0.7440
96 C D 0.0000
97 E D -0.6959
98 V D 0.0000
99 S D 0.0000
100 V D 0.0000
101 G D -0.8554
102 T D -0.6663
103 G D -0.7101
104 Y D -0.3639
105 R D -1.7932
106 G D 0.0000
107 Q D -1.4589
108 G D 0.0000
109 T D -0.7740
110 Q D -1.2112
111 V D 0.0000
112 T D -0.1713
113 V D 0.0000
114 S D -0.7477
115 A D -1.0726
116 G D -1.9513
117 R D -2.9626
118 A D -1.9063
119 G D -2.0020
120 E D -2.6937
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Laboratory of Theory of Biopolymers 2018