| Chain sequence(s) |
A: GGKGHFG
C: GGKGHFG B: GGKGHFG E: GGKGHFG D: GGKGHFG G: GGKGHFG F: GGKGHFG I: GGKGHFG H: GGKGHFG K: GGKGHFG J: GGKGHFG L: GGKGHFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:05)
[INFO] Main: Simulation completed successfully. (00:05:11)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.7573 | |
| 2 | G | A | -2.0987 | |
| 3 | K | A | -3.1240 | |
| 4 | G | A | -2.2508 | |
| 5 | H | A | -2.0039 | |
| 6 | F | A | -1.1223 | |
| 7 | G | A | -0.9720 | |
| 1 | G | B | -1.4159 | |
| 2 | G | B | -1.7010 | |
| 3 | K | B | -2.6571 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -2.3330 | |
| 6 | F | B | 0.0000 | |
| 7 | G | B | -1.3774 | |
| 1 | G | C | -1.7559 | |
| 2 | G | C | -2.0073 | |
| 3 | K | C | -2.5894 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -2.1577 | |
| 6 | F | C | 0.0000 | |
| 7 | G | C | -1.6521 | |
| 1 | G | D | -1.8969 | |
| 2 | G | D | -2.0891 | |
| 3 | K | D | -2.5900 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | -2.1108 | |
| 6 | F | D | 0.0000 | |
| 7 | G | D | -1.5894 | |
| 1 | G | E | -1.8656 | |
| 2 | G | E | 0.0000 | |
| 3 | K | E | -2.8856 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -1.8767 | |
| 6 | F | E | 0.0000 | |
| 7 | G | E | -1.5760 | |
| 1 | G | F | -1.8766 | |
| 2 | G | F | -2.3167 | |
| 3 | K | F | -2.7573 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -1.8917 | |
| 6 | F | F | 0.0000 | |
| 7 | G | F | -1.2281 | |
| 1 | G | G | -1.4331 | |
| 2 | G | G | -2.3762 | |
| 3 | K | G | -3.0056 | |
| 4 | G | G | -2.1839 | |
| 5 | H | G | -1.6644 | |
| 6 | F | G | -0.3818 | |
| 7 | G | G | -0.6923 | |
| 1 | G | H | -1.3051 | |
| 2 | G | H | -1.9825 | |
| 3 | K | H | -2.6037 | |
| 4 | G | H | -2.2742 | |
| 5 | H | H | -2.0655 | |
| 6 | F | H | -1.5086 | |
| 7 | G | H | -1.2437 | |
| 1 | G | I | -1.7966 | |
| 2 | G | I | -2.1532 | |
| 3 | K | I | -2.6556 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -1.9705 | |
| 6 | F | I | 0.0000 | |
| 7 | G | I | -1.5209 | |
| 1 | G | J | -1.9036 | |
| 2 | G | J | 0.0000 | |
| 3 | K | J | -2.9306 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -2.0189 | |
| 6 | F | J | 0.0000 | |
| 7 | G | J | -1.4988 | |
| 1 | G | K | -2.0095 | |
| 2 | G | K | -2.5034 | |
| 3 | K | K | -2.8757 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -2.0283 | |
| 6 | F | K | 0.0000 | |
| 7 | G | K | -1.5315 | |
| 1 | G | L | -1.9927 | |
| 2 | G | L | 0.0000 | |
| 3 | K | L | -3.5257 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | -2.3274 | |
| 6 | F | L | 0.0000 | |
| 7 | G | L | -1.4283 |