| Chain sequence(s) |
A: QQKFQFQFEQQ
C: QQKFQFQFEQQ B: QQKFQFQFEQQ E: QQKFQFQFEQQ D: QQKFQFQFEQQ G: QQKFQFQFEQQ F: QQKFQFQFEQQ I: QQKFQFQFEQQ H: QQKFQFQFEQQ K: QQKFQFQFEQQ J: QQKFQFQFEQQ L: QQKFQFQFEQQ input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:43)
[INFO] Main: Simulation completed successfully. (00:05:46)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -2.8335 | |
| 2 | Q | A | 0.0000 | |
| 3 | K | A | -2.1629 | |
| 4 | F | A | 0.0000 | |
| 5 | Q | A | -1.1509 | |
| 6 | F | A | 0.0000 | |
| 7 | Q | A | -1.1932 | |
| 8 | F | A | 0.0000 | |
| 9 | E | A | -2.4525 | |
| 10 | Q | A | -2.3055 | |
| 11 | Q | A | -2.6476 | |
| 1 | Q | B | -2.4772 | |
| 2 | Q | B | 0.0000 | |
| 3 | K | B | -2.4969 | |
| 4 | F | B | 0.0000 | |
| 5 | Q | B | -1.3969 | |
| 6 | F | B | 0.0000 | |
| 7 | Q | B | -1.2246 | |
| 8 | F | B | 0.0000 | |
| 9 | E | B | -2.6058 | |
| 10 | Q | B | -2.6472 | |
| 11 | Q | B | -2.8812 | |
| 1 | Q | C | -2.3422 | |
| 2 | Q | C | -2.2948 | |
| 3 | K | C | -2.5991 | |
| 4 | F | C | -0.7306 | |
| 5 | Q | C | -0.7943 | |
| 6 | F | C | 1.2178 | |
| 7 | Q | C | -0.1047 | |
| 8 | F | C | -0.2806 | |
| 9 | E | C | -2.2027 | |
| 10 | Q | C | -2.6871 | |
| 11 | Q | C | -2.5949 | |
| 1 | Q | D | -3.0648 | |
| 2 | Q | D | -2.3591 | |
| 3 | K | D | -2.0719 | |
| 4 | F | D | 0.0000 | |
| 5 | Q | D | -0.6232 | |
| 6 | F | D | 0.0196 | |
| 7 | Q | D | -1.1670 | |
| 8 | F | D | 0.0000 | |
| 9 | E | D | -2.6355 | |
| 10 | Q | D | -2.3238 | |
| 11 | Q | D | -2.6569 | |
| 1 | Q | E | -2.5447 | |
| 2 | Q | E | -2.1967 | |
| 3 | K | E | -2.3489 | |
| 4 | F | E | 0.0000 | |
| 5 | Q | E | -1.5733 | |
| 6 | F | E | 0.0000 | |
| 7 | Q | E | -1.0536 | |
| 8 | F | E | 0.0000 | |
| 9 | E | E | -1.9625 | |
| 10 | Q | E | -2.3473 | |
| 11 | Q | E | -2.8409 | |
| 1 | Q | F | -2.8042 | |
| 2 | Q | F | 0.0000 | |
| 3 | K | F | -1.9513 | |
| 4 | F | F | 0.0000 | |
| 5 | Q | F | -0.9675 | |
| 6 | F | F | 0.0000 | |
| 7 | Q | F | -1.2333 | |
| 8 | F | F | 0.0000 | |
| 9 | E | F | -2.4243 | |
| 10 | Q | F | -2.4917 | |
| 11 | Q | F | -2.8110 | |
| 1 | Q | G | -3.1503 | |
| 2 | Q | G | -2.5903 | |
| 3 | K | G | -2.4767 | |
| 4 | F | G | 0.0000 | |
| 5 | Q | G | -0.8883 | |
| 6 | F | G | 0.0000 | |
| 7 | Q | G | -0.7914 | |
| 8 | F | G | 0.0000 | |
| 9 | E | G | -2.2177 | |
| 10 | Q | G | -2.2956 | |
| 11 | Q | G | -2.7585 | |
| 1 | Q | H | -2.3810 | |
| 2 | Q | H | -2.2819 | |
| 3 | K | H | -2.2345 | |
| 4 | F | H | -0.3428 | |
| 5 | Q | H | -0.6688 | |
| 6 | F | H | 0.6805 | |
| 7 | Q | H | -0.6396 | |
| 8 | F | H | -0.6032 | |
| 9 | E | H | -2.3370 | |
| 10 | Q | H | -2.8122 | |
| 11 | Q | H | -2.6646 | |
| 1 | Q | I | -2.6194 | |
| 2 | Q | I | -2.2901 | |
| 3 | K | I | -2.6610 | |
| 4 | F | I | -0.7539 | |
| 5 | Q | I | -1.3586 | |
| 6 | F | I | -0.2668 | |
| 7 | Q | I | -1.5585 | |
| 8 | F | I | -1.1868 | |
| 9 | E | I | -2.8242 | |
| 10 | Q | I | -2.0424 | |
| 11 | Q | I | -2.2319 | |
| 1 | Q | J | -2.7101 | |
| 2 | Q | J | -2.3985 | |
| 3 | K | J | -2.7029 | |
| 4 | F | J | -0.6292 | |
| 5 | Q | J | -1.4352 | |
| 6 | F | J | -0.4159 | |
| 7 | Q | J | -1.7521 | |
| 8 | F | J | -1.2733 | |
| 9 | E | J | -2.9393 | |
| 10 | Q | J | -2.2071 | |
| 11 | Q | J | -2.4420 | |
| 1 | Q | K | -2.9789 | |
| 2 | Q | K | 0.0000 | |
| 3 | K | K | -2.6518 | |
| 4 | F | K | 0.0000 | |
| 5 | Q | K | -1.4199 | |
| 6 | F | K | 0.0000 | |
| 7 | Q | K | -1.2820 | |
| 8 | F | K | 0.0000 | |
| 9 | E | K | -2.6811 | |
| 10 | Q | K | -2.7544 | |
| 11 | Q | K | -2.9765 | |
| 1 | Q | L | -2.8621 | |
| 2 | Q | L | -2.5217 | |
| 3 | K | L | -2.3078 | |
| 4 | F | L | 0.0000 | |
| 5 | Q | L | -1.0722 | |
| 6 | F | L | 0.0000 | |
| 7 | Q | L | -1.1538 | |
| 8 | F | L | 0.0000 | |
| 9 | E | L | -2.4348 | |
| 10 | Q | L | -2.4084 | |
| 11 | Q | L | -2.7780 |