Project name: query_structure

Status: done

Started: 2026-03-17 00:49:56
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGSIFSSNAMAWYRQTPEKQRELICDITRGGITKCADSVKGRFTISRDNTKNTVYLQMNSLKSEDTAVYYCAAKSEGYFGFPRVENEYPYWGQGTQVTV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:26)
Show buried residues

Minimal score value
-3.754
Maximal score value
2.3881
Average score
-0.6961
Total score value
-85.6167

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -0.8998
2 V A 0.2324
3 Q A -0.3550
4 L A 0.0000
5 V A 0.8967
6 E A 0.0000
7 S A -0.5150
8 G A -0.9722
9 G A -0.7904
10 G A 0.1974
11 L A 1.1960
12 V A 0.2070
13 Q A -1.0238
14 A A -1.2862
15 G A -1.3088
16 G A -0.8297
17 S A -1.2546
18 L A -1.0493
19 R A -2.2406
20 L A 0.0000
21 S A -0.4863
22 C A 0.0000
23 A A -0.2218
24 A A -0.0157
25 S A -0.3041
26 G A -0.1959
27 S A -0.0020
28 I A 0.0000
29 F A 0.6277
30 S A -0.3480
31 S A 0.0000
32 N A -1.8071
33 A A 0.0000
34 M A 0.0000
35 A A 0.0000
36 W A 0.0000
37 Y A -0.4039
38 R A -1.1646
39 Q A -2.1942
40 T A 0.0000
41 P A -2.0093
42 E A -3.2172
43 K A -3.7540
44 Q A -3.2734
45 R A -2.8465
46 E A -1.5088
47 L A -0.7353
48 I A 0.0000
49 C A 0.0000
50 D A -0.6125
51 I A 0.0000
52 T A -0.8647
53 R A -1.6249
54 G A -0.8446
55 G A -0.4130
56 I A 0.9544
57 T A -0.3235
58 K A -1.7449
59 C A -1.7681
60 A A -1.7684
61 D A -2.7528
62 S A -1.8094
63 V A 0.0000
64 K A -2.9113
65 G A -1.7885
66 R A -1.7314
67 F A 0.0000
68 T A -1.2656
69 I A 0.0000
70 S A -0.3685
71 R A -1.0209
72 D A -1.2953
73 N A -1.2358
74 T A -1.1932
75 K A -2.0816
76 N A -1.3020
77 T A 0.0000
78 V A 0.0000
79 Y A -0.7340
80 L A 0.0000
81 Q A -1.5934
82 M A 0.0000
83 N A -1.4718
84 S A -1.2447
85 L A 0.0000
86 K A -2.4737
87 S A -1.8686
88 E A -2.3657
89 D A 0.0000
90 T A -0.8904
91 A A 0.0000
92 V A -0.7300
93 Y A 0.0000
94 Y A -0.2272
95 C A 0.0000
96 A A 0.0000
97 A A 0.0000
98 K A -1.3654
99 S A -1.0621
100 E A -1.9629
101 G A -0.3152
102 Y A 1.7099
103 F A 2.3881
104 G A 1.4063
105 F A 1.8601
106 P A -0.2890
107 R A -1.8580
108 V A -0.9549
109 E A -2.5023
110 N A -2.3192
111 E A -1.5985
112 Y A 0.0000
113 P A -0.2453
114 Y A 0.3455
115 W A 0.4973
116 G A 0.0833
117 Q A -0.8543
118 G A 0.0000
119 T A 0.0000
120 Q A -1.0419
121 V A 0.0000
122 T A -0.0991
123 V A -0.4168
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018