| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGSIFSSNAMAWYRQTPEKQRELICDITRGGITKCADSVKGRFTISRDNTKNTVYLQMNSLKSEDTAVYYCAAKSEGYFGFPRVENEYPYWGQGTQVTV
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:25)
[INFO] Main: Simulation completed successfully. (00:01:26)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -0.8998 | |
| 2 | V | A | 0.2324 | |
| 3 | Q | A | -0.3550 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.8967 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5150 | |
| 8 | G | A | -0.9722 | |
| 9 | G | A | -0.7904 | |
| 10 | G | A | 0.1974 | |
| 11 | L | A | 1.1960 | |
| 12 | V | A | 0.2070 | |
| 13 | Q | A | -1.0238 | |
| 14 | A | A | -1.2862 | |
| 15 | G | A | -1.3088 | |
| 16 | G | A | -0.8297 | |
| 17 | S | A | -1.2546 | |
| 18 | L | A | -1.0493 | |
| 19 | R | A | -2.2406 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4863 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2218 | |
| 24 | A | A | -0.0157 | |
| 25 | S | A | -0.3041 | |
| 26 | G | A | -0.1959 | |
| 27 | S | A | -0.0020 | |
| 28 | I | A | 0.0000 | |
| 29 | F | A | 0.6277 | |
| 30 | S | A | -0.3480 | |
| 31 | S | A | 0.0000 | |
| 32 | N | A | -1.8071 | |
| 33 | A | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.4039 | |
| 38 | R | A | -1.1646 | |
| 39 | Q | A | -2.1942 | |
| 40 | T | A | 0.0000 | |
| 41 | P | A | -2.0093 | |
| 42 | E | A | -3.2172 | |
| 43 | K | A | -3.7540 | |
| 44 | Q | A | -3.2734 | |
| 45 | R | A | -2.8465 | |
| 46 | E | A | -1.5088 | |
| 47 | L | A | -0.7353 | |
| 48 | I | A | 0.0000 | |
| 49 | C | A | 0.0000 | |
| 50 | D | A | -0.6125 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | -0.8647 | |
| 53 | R | A | -1.6249 | |
| 54 | G | A | -0.8446 | |
| 55 | G | A | -0.4130 | |
| 56 | I | A | 0.9544 | |
| 57 | T | A | -0.3235 | |
| 58 | K | A | -1.7449 | |
| 59 | C | A | -1.7681 | |
| 60 | A | A | -1.7684 | |
| 61 | D | A | -2.7528 | |
| 62 | S | A | -1.8094 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.9113 | |
| 65 | G | A | -1.7885 | |
| 66 | R | A | -1.7314 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -1.2656 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.3685 | |
| 71 | R | A | -1.0209 | |
| 72 | D | A | -1.2953 | |
| 73 | N | A | -1.2358 | |
| 74 | T | A | -1.1932 | |
| 75 | K | A | -2.0816 | |
| 76 | N | A | -1.3020 | |
| 77 | T | A | 0.0000 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.7340 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.5934 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.4718 | |
| 84 | S | A | -1.2447 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.4737 | |
| 87 | S | A | -1.8686 | |
| 88 | E | A | -2.3657 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.8904 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.7300 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.2272 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | K | A | -1.3654 | |
| 99 | S | A | -1.0621 | |
| 100 | E | A | -1.9629 | |
| 101 | G | A | -0.3152 | |
| 102 | Y | A | 1.7099 | |
| 103 | F | A | 2.3881 | |
| 104 | G | A | 1.4063 | |
| 105 | F | A | 1.8601 | |
| 106 | P | A | -0.2890 | |
| 107 | R | A | -1.8580 | |
| 108 | V | A | -0.9549 | |
| 109 | E | A | -2.5023 | |
| 110 | N | A | -2.3192 | |
| 111 | E | A | -1.5985 | |
| 112 | Y | A | 0.0000 | |
| 113 | P | A | -0.2453 | |
| 114 | Y | A | 0.3455 | |
| 115 | W | A | 0.4973 | |
| 116 | G | A | 0.0833 | |
| 117 | Q | A | -0.8543 | |
| 118 | G | A | 0.0000 | |
| 119 | T | A | 0.0000 | |
| 120 | Q | A | -1.0419 | |
| 121 | V | A | 0.0000 | |
| 122 | T | A | -0.0991 | |
| 123 | V | A | -0.4168 |