Project name: VHH2

Status: done

Started: 2024-06-10 11:31:13
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Chain sequence(s) H: QVQLQESGGGLVQPGGSLRLSCVLSNGIFSTYGMNWYRQAPGKQREFVASITSSGSTNYSPSVKGRFTISRENAKSTVNLQMNNLNPEDTAVYYCNTWSTWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:26)
Show buried residues

Minimal score value
-2.9278
Maximal score value
1.2034
Average score
-0.7009
Total score value
-77.7986

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.6715
2 V H -1.0184
3 Q H -1.8668
4 L H 0.0000
5 Q H -1.1437
6 E H 0.0000
7 S H -0.9147
8 G H -1.1579
9 G H -0.6269
11 G H 0.1169
12 L H 1.1489
13 V H 0.0659
14 Q H -1.3931
15 P H -1.8391
16 G H -1.7596
17 G H -1.1748
18 S H -1.3531
19 L H -0.9411
20 R H -2.0400
21 L H 0.0000
22 S H -0.6297
23 C H 0.0000
24 V H 0.0305
25 L H 0.0000
26 S H -1.0437
27 N H -1.5474
28 G H -0.6395
29 I H 1.2034
30 F H 0.0000
35 S H -0.2681
36 T H 0.3244
37 Y H 0.8855
38 G H 0.1543
39 M H 0.0000
40 N H 0.2678
41 W H 0.0000
42 Y H 0.0000
43 R H 0.0000
44 Q H -1.5624
45 A H -1.7495
46 P H -1.4581
47 G H -1.7864
48 K H -2.9278
49 Q H -2.6735
50 R H -1.9444
51 E H -1.2558
52 F H 0.0431
53 V H 0.0000
54 A H 0.0000
55 S H -0.3577
56 I H 0.0000
57 T H -0.5543
58 S H -0.5415
59 S H -0.6354
63 G H -0.9408
64 S H -0.7951
65 T H -0.9168
66 N H -1.5808
67 Y H -1.0171
68 S H 0.0000
69 P H -1.0063
70 S H -1.0151
71 V H 0.0000
72 K H -2.2206
74 G H -1.6419
75 R H -1.6460
76 F H 0.0000
77 T H -0.9997
78 I H 0.0000
79 S H -0.6026
80 R H -1.2147
81 E H -1.6228
82 N H -1.6117
83 A H -1.3954
84 K H -2.0368
85 S H -0.9462
86 T H -0.8094
87 V H 0.0000
88 N H -0.7707
89 L H 0.0000
90 Q H -1.1950
91 M H 0.0000
92 N H -1.7199
93 N H -2.2103
94 L H 0.0000
95 N H -2.2028
96 P H -1.7452
97 E H -2.2417
98 D H 0.0000
99 T H -0.7848
100 A H 0.0000
101 V H -0.3053
102 Y H 0.0000
103 Y H -0.2488
104 C H 0.0000
105 N H 0.0000
106 T H 0.0000
107 W H 1.1947
116 S H 0.5333
117 T H 0.2593
118 W H 0.0903
119 G H -0.7624
120 Q H -1.5083
121 G H -0.7932
122 T H -0.8039
123 Q H -0.7337
124 V H 0.0000
125 T H -0.1661
126 V H 0.0000
127 S H -0.6731
128 S H -0.7560
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Laboratory of Theory of Biopolymers 2018