Project name: gp63_002

Status: done

Started: 2026-04-27 13:37:37
Settings
Chain sequence(s) H: QVQLVESGGGLVQPGGSLRLSCAASGLSGRPFSDYSLGWFRQAPGQGLEAVAAINGQGGETYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAARYSRDLQLPAPENYQYWGQGTLVTVS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:08)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:08)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:08)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:08)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:57)
Show buried residues

Minimal score value
-3.2165
Maximal score value
1.6132
Average score
-0.7738
Total score value
-98.2721

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.6367
2 V H 0.0000
3 Q H -1.1909
4 L H 0.0000
5 V H 0.8759
6 E H 0.0000
7 S H -0.2576
8 G H -0.6129
9 G H 0.1471
10 G H 0.7003
11 L H 1.4087
12 V H -0.0405
13 Q H -1.4124
14 P H -1.8682
15 G H -1.6831
16 G H -1.1884
17 S H -1.4212
18 L H -1.0440
19 R H -2.3229
20 L H 0.0000
21 S H -0.4934
22 C H 0.0000
23 A H -0.2023
24 A H 0.0000
25 S H -0.8762
26 G H -1.4973
27 L H 0.0000
28 S H -1.1928
29 G H -1.2161
30 R H -1.3902
31 P H -1.0430
32 F H 0.0000
33 S H -1.2658
34 D H 0.0000
35 Y H 0.0000
36 S H 0.0000
37 L H 0.0000
38 G H 0.0000
39 W H 0.0000
40 F H 0.0000
41 R H -0.6346
42 Q H -1.0216
43 A H -1.1649
44 P H -0.9383
45 G H -1.3121
46 Q H -1.9833
47 G H -1.4796
48 L H -0.9484
49 E H -1.7184
50 A H -0.4598
51 V H 0.0000
52 A H 0.0000
53 A H 0.0000
54 I H 0.0000
55 N H 0.0000
56 G H 0.0000
57 Q H -2.5519
58 G H -2.1680
59 G H -2.0365
60 E H -2.4785
61 T H -0.7302
62 Y H 0.2563
63 Y H -0.5080
64 A H -1.4083
65 D H -2.4267
66 S H -1.8780
67 V H 0.0000
68 K H -2.5491
69 G H -1.9091
70 R H -1.8875
71 F H 0.0000
72 T H -1.0226
73 I H 0.0000
74 S H -0.8551
75 R H 0.0000
76 D H -1.8502
77 N H -1.9042
78 S H -1.6493
79 K H -2.3588
80 N H -1.7069
81 T H -1.0102
82 L H 0.0000
83 Y H 0.0000
84 L H 0.0000
85 Q H -1.7378
86 M H 0.0000
87 N H -2.2071
88 S H -1.7040
89 L H 0.0000
90 R H -3.0112
91 A H -2.0429
92 E H -2.4668
93 D H 0.0000
94 T H -0.5447
95 A H 0.0000
96 V H 0.7288
97 Y H 0.0000
98 Y H 0.2025
99 C H 0.0000
100 A H 0.0000
101 A H 0.0000
102 R H -1.1852
103 Y H -0.1520
104 S H -1.3003
105 R H -3.0308
106 D H -3.2165
107 L H -1.9406
108 Q H -1.2558
109 L H 0.5609
110 P H 0.0726
111 A H -0.6681
112 P H -1.1805
113 E H -2.1101
114 N H -1.5508
115 Y H 0.0000
116 Q H -1.4492
117 Y H -0.5926
118 W H -0.1075
119 G H -0.1162
120 Q H -0.8347
121 G H 0.0000
122 T H 0.5760
123 L H 1.6132
124 V H 0.0000
125 T H 0.2804
126 V H 0.0000
127 S H -0.8834
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018