Project name: swiss_design4

Status: done

Started: 2025-07-26 20:33:59
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Chain sequence(s) A: VQLVESGGGLVQPGGSLRLSCAASSPQWQKSKFLAGLWFRQAPGQGLEAVASYGENKETGLGSISRDPRFTISRDNSKNTLYLQMNSLRAEDTAVYYCALGPRLMEDKEQFQLATHWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:12)
Show buried residues

Minimal score value
-3.6554
Maximal score value
1.4791
Average score
-0.6578
Total score value
-83.545

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 V A 0.9152
3 Q A -0.2935
4 L A 0.0000
5 V A 0.5578
6 E A 0.0000
7 S A -0.3802
8 G A -0.6479
9 G A 0.0295
10 G A 0.5802
11 L A 1.3570
12 V A -0.0274
13 Q A -1.3087
14 P A -1.5547
15 G A -1.3598
16 G A 0.0000
17 S A -1.1926
18 L A -1.0193
19 R A -2.2016
20 L A 0.0000
21 S A -0.5073
22 C A 0.0000
23 A A -0.3620
24 A A 0.0000
25 S A -0.4203
26 S A -0.2805
27 P A -0.9246
28 Q A -2.3627
29 W A 0.0000
30 Q A -3.6554
31 K A -3.3884
32 S A 0.0000
33 K A -2.5893
34 F A -1.2277
35 L A 0.0000
36 A A 0.0000
37 G A 0.0000
38 L A 0.4477
39 W A 0.0000
40 F A 0.4859
41 R A 0.0000
42 Q A -0.2772
43 A A -0.8308
44 P A -0.7835
45 G A -1.1995
46 Q A -1.6335
47 G A -0.8374
48 L A 0.3777
49 E A -0.3117
50 A A 0.0539
51 V A 0.0000
52 A A 0.1818
53 S A 0.0000
54 Y A 0.0000
55 G A -1.8998
56 E A -3.4014
57 N A -3.6546
58 K A -3.6036
59 E A -3.2759
60 T A -1.7125
61 G A -0.7974
62 L A 0.5687
63 G A 0.0023
64 S A 0.3503
65 I A 1.1882
66 S A 0.0509
67 R A 0.0000
68 D A -1.1772
69 P A -0.9509
70 R A 0.0000
71 F A -0.9442
72 T A -0.6569
73 I A -0.2431
74 S A -0.7308
75 R A 0.0000
76 D A -1.7333
77 N A -2.5970
78 S A -1.6912
79 K A -2.5034
80 N A -2.3542
81 T A -1.1396
82 L A 0.0000
83 Y A -0.5042
84 L A 0.0000
85 Q A -1.3914
86 M A 0.0000
87 N A -1.1884
88 S A -1.0506
89 L A 0.0000
90 R A -2.2234
91 A A -1.7096
92 E A -2.2158
93 D A 0.0000
94 T A -0.4376
95 A A 0.0000
96 V A 0.8195
97 Y A 0.0000
98 Y A 0.5998
99 C A 0.0000
100 A A 0.0000
101 L A 0.0000
102 G A 0.0000
103 P A 0.0000
104 R A -1.2135
105 L A -1.0071
106 M A -0.7805
107 E A -2.3310
108 D A -2.1834
109 K A -2.8630
110 E A -2.7623
111 Q A -2.3069
112 F A -0.5394
113 Q A -0.9122
114 L A 0.9913
115 A A 0.7124
116 T A 0.2236
117 H A 0.1574
118 W A 0.3451
119 G A -0.2726
120 Q A -0.9407
121 G A 0.0500
122 T A 0.4462
123 L A 1.4791
124 V A 0.0000
125 T A 0.2867
126 V A 0.0000
127 S A -0.7639
128 S A -0.5612
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Laboratory of Theory of Biopolymers 2018