Project name: Rat IAPP_20

Status: done

Started: 2026-06-25 08:16:16
Settings
Chain sequence(s) A: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
C: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
B: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
E: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
D: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
G: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
F: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
I: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
H: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
K: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
J: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
M: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
L: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
O: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
N: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
Q: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
P: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
S: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
R: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:27:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:27:44)
Show buried residues

Minimal score value
-3.4726
Maximal score value
1.9942
Average score
-0.6579
Total score value
-462.4976

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.6558
2 C A -0.9377
3 N A -1.6275
4 T A -1.0088
5 A A -0.5166
6 T A -1.0709
7 C A -1.2223
8 A A 0.0000
9 T A -1.2132
10 Q A -1.6842
11 R A -1.8950
12 L A -1.1447
13 A A 0.0000
14 N A -2.0112
15 F A -1.2762
16 L A 0.0000
17 V A -0.8584
18 R A -2.1558
19 S A -1.1486
20 S A -0.8107
21 N A -1.8295
22 N A -1.5611
23 L A 0.4502
24 G A -0.1822
25 P A 0.0215
26 V A 1.1213
27 L A 0.0000
28 P A -0.2330
29 P A -0.9112
30 T A -1.0881
31 N A -1.5314
32 V A -1.1071
33 G A -1.2019
34 S A -1.1035
35 N A -1.3789
36 T A -0.6352
37 Y A 0.7118
1 K B -1.9285
2 C B -0.9654
3 N B -1.1371
4 T B -0.6521
5 A B 0.0000
6 T B 0.0000
7 C B -0.4044
8 A B -0.0927
9 T B 0.0000
10 Q B -0.1860
11 R B -0.4354
12 L B 0.4439
13 A B 0.0000
14 N B 0.0000
15 F B 0.1917
16 L B 0.0000
17 V B 0.0000
18 R B -0.1066
19 S B 0.0000
20 S B 0.0000
21 N B 0.0000
22 N B 0.0000
23 L B 0.0000
24 G B 0.0000
25 P B 1.0041
26 V B 1.9942
27 L B 1.4533
28 P B 0.8831
29 P B 0.0000
30 T B -0.0957
31 N B 0.0000
32 V B 0.0000
33 G B -1.2059
34 S B -1.3212
35 N B -1.1749
36 T B -0.1474
37 Y B 0.9170
1 K C -2.4063
2 C C -1.5885
3 N C -1.8257
4 T C -1.0170
5 A C -0.5354
6 T C -0.6692
7 C C -0.5404
8 A C 0.0000
9 T C 0.0000
10 Q C -0.2734
11 R C -0.6545
12 L C 0.0000
13 A C 0.0000
14 N C -1.0985
15 F C 0.0000
16 L C 0.0000
17 V C -1.8111
18 R C -2.6745
19 S C 0.0000
20 S C 0.0000
21 N C -2.9750
22 N C -2.6644
23 L C 0.0000
24 G C -0.4651
25 P C 0.0000
26 V C 1.3222
27 L C 0.0000
28 P C 0.0000
29 P C 0.0000
30 T C 0.0000
31 N C 0.0000
32 V C -0.0497
33 G C -1.0016
34 S C -0.9835
35 N C -1.8451
36 T C -0.3495
37 Y C 0.6668
1 K D -2.4233
2 C D -1.4009
3 N D -1.6465
4 T D -0.9968
5 A D -0.3313
6 T D 0.0000
7 C D 0.0000
8 A D 0.0000
9 T D -0.0221
10 Q D 0.0000
11 R D -0.1428
12 L D -0.3081
13 A D 0.0000
14 N D 0.0000
15 F D 0.0000
16 L D 0.0000
17 V D 0.0000
18 R D -2.6283
19 S D 0.0000
20 S D 0.0000
21 N D -2.7250
22 N D -2.5710
23 L D 0.0000
24 G D -0.9532
25 P D -0.2606
26 V D 0.7866
27 L D 0.0000
28 P D 0.0000
29 P D 0.0000
30 T D 0.0000
31 N D 0.0000
32 V D 0.8001
33 G D -0.7168
34 S D -0.8214
35 N D -1.5238
36 T D -0.3061
37 Y D 0.8802
1 K E -2.5528
2 C E -1.8838
3 N E -1.8647
4 T E -1.0631
5 A E -0.4014
6 T E 0.0000
7 C E 0.0000
8 A E 0.0000
9 T E -0.1775
10 Q E 0.0000
11 R E -0.6056
12 L E 0.0000
13 A E 0.0000
14 N E -1.0857
15 F E 0.0000
16 L E 0.0000
17 V E 0.0000
18 R E -3.0132
19 S E 0.0000
20 S E 0.0000
21 N E -2.8794
22 N E -2.7275
23 L E 0.0000
24 G E -0.5852
25 P E 0.0000
26 V E 0.7967
27 L E 0.0000
28 P E 0.0000
29 P E -0.2800
30 T E 0.0000
31 N E 0.0000
32 V E -0.3090
33 G E -1.1749
34 S E -1.5189
35 N E -2.0032
36 T E -0.3585
37 Y E 0.6735
1 K F -3.0206
2 C F -1.9053
3 N F -1.9483
4 T F -1.1149
5 A F -0.4283
6 T F 0.0000
7 C F -0.8770
8 A F 0.0000
9 T F -0.4452
10 Q F -0.4573
11 R F -0.8609
12 L F 0.0000
13 A F 0.0000
14 N F -1.4221
15 F F 0.0000
16 L F 0.0000
17 V F 0.0000
18 R F -3.2859
19 S F 0.0000
20 S F 0.0000
21 N F -3.0072
22 N F -2.9874
23 L F 0.0000
24 G F -1.1490
25 P F 0.0000
26 V F 0.0000
27 L F 0.0000
28 P F 0.0000
29 P F -0.3986
30 T F 0.0000
31 N F 0.0000
32 V F -0.6059
33 G F -1.4656
34 S F -2.1658
35 N F -2.8280
36 T F -0.5970
37 Y F 0.5594
1 K G -1.2811
2 C G -1.0793
3 N G -1.7556
4 T G -1.2356
5 A G -0.9125
6 T G 0.0000
7 C G 0.0000
8 A G -0.8513
9 T G 0.0000
10 Q G -0.8754
11 R G -1.1337
12 L G 0.0000
13 A G 0.0000
14 N G -1.5879
15 F G 0.0000
16 L G 0.0000
17 V G 0.0000
18 R G -3.2822
19 S G 0.0000
20 S G 0.0000
21 N G -3.1576
22 N G -3.1154
23 L G 0.0000
24 G G 0.0000
25 P G 0.0000
26 V G 0.0000
27 L G 0.3032
28 P G -0.0379
29 P G -0.5919
30 T G 0.0000
31 N G -1.1949
32 V G 0.0000
33 G G 0.0000
34 S G -1.4669
35 N G -1.6885
36 T G -0.5400
37 Y G 0.7284
1 K H -2.4839
2 C H -1.6330
3 N H -2.0709
4 T H -1.1996
5 A H -0.7153
6 T H -0.8807
7 C H -0.5999
8 A H 0.0000
9 T H 0.0000
10 Q H -0.8429
11 R H -1.0782
12 L H 0.0000
13 A H 0.0000
14 N H -2.4323
15 F H 0.0000
16 L H 0.0000
17 V H 0.0000
18 R H -3.4688
19 S H 0.0000
20 S H 0.0000
21 N H -3.2455
22 N H -3.0058
23 L H 0.0000
24 G H -0.7800
25 P H 0.3395
26 V H 1.0830
27 L H 0.0000
28 P H 0.0000
29 P H -0.6835
30 T H 0.0000
31 N H -0.7907
32 V H -0.8694
33 G H 0.0000
34 S H -1.9742
35 N H -2.3675
36 T H -1.0235
37 Y H 0.4914
1 K I -1.4279
2 C I -0.3928
3 N I -1.0928
4 T I -1.1516
5 A I 0.0000
6 T I 0.0000
7 C I -0.6108
8 A I 0.0000
9 T I 0.0000
10 Q I 0.0000
11 R I -1.1282
12 L I 0.0000
13 A I 0.0000
14 N I -1.5066
15 F I 0.0000
16 L I 0.0000
17 V I 0.0000
18 R I -2.7661
19 S I 0.0000
20 S I 0.0000
21 N I -3.1792
22 N I -2.5655
23 L I 0.0000
24 G I 0.0000
25 P I 0.0000
26 V I 1.0385
27 L I 0.0000
28 P I 0.0000
29 P I -0.6254
30 T I -1.0759
31 N I -1.6574
32 V I 0.0000
33 G I -1.3229
34 S I -1.2719
35 N I -1.3569
36 T I -0.5025
37 Y I 0.5962
1 K J -1.3866
2 C J -0.3958
3 N J -0.8166
4 T J -0.9687
5 A J 0.0000
6 T J 0.0000
7 C J -0.5162
8 A J 0.0000
9 T J 0.0000
10 Q J -0.9716
11 R J -1.5834
12 L J 0.0000
13 A J 0.0000
14 N J -1.7117
15 F J 0.0000
16 L J 0.0000
17 V J -2.3496
18 R J -2.9360
19 S J 0.0000
20 S J 0.0000
21 N J -3.0041
22 N J -2.5691
23 L J -1.0929
24 G J -0.3759
25 P J 0.5715
26 V J 0.9012
27 L J 0.0000
28 P J 0.0718
29 P J -0.6155
30 T J 0.0000
31 N J -1.3278
32 V J 0.0000
33 G J -1.0276
34 S J -1.1640
35 N J -1.2614
36 T J -0.4456
37 Y J 0.6190
1 K K -2.4025
2 C K -1.6034
3 N K -1.7550
4 T K -1.0294
5 A K -0.5352
6 T K -0.8482
7 C K 0.0000
8 A K -0.4293
9 T K -0.3667
10 Q K 0.0000
11 R K -0.6405
12 L K 0.0000
13 A K 0.0000
14 N K -1.1870
15 F K 0.0000
16 L K 0.0000
17 V K 0.0000
18 R K -3.4015
19 S K 0.0000
20 S K 0.0000
21 N K -3.2964
22 N K -3.1176
23 L K 0.0000
24 G K 0.0000
25 P K 0.0000
26 V K 0.0000
27 L K 0.0000
28 P K 0.0000
29 P K 0.0000
30 T K 0.0000
31 N K 0.0000
32 V K 0.0426
33 G K -1.0908
34 S K -1.0213
35 N K -1.5072
36 T K -0.1069
37 Y K 0.8853
1 K L -1.8899
2 C L -1.4401
3 N L -1.8666
4 T L -1.2057
5 A L -0.7380
6 T L 0.0000
7 C L 0.0000
8 A L 0.0000
9 T L 0.0000
10 Q L -0.9685
11 R L -1.3664
12 L L 0.0000
13 A L 0.0000
14 N L -2.3632
15 F L 0.0000
16 L L 0.0000
17 V L 0.0000
18 R L -3.4726
19 S L 0.0000
20 S L 0.0000
21 N L 0.0000
22 N L -2.5691
23 L L 0.0000
24 G L 0.0000
25 P L 0.0000
26 V L 0.9718
27 L L 0.0000
28 P L 0.0000
29 P L -0.5744
30 T L 0.0000
31 N L -0.9837
32 V L 0.0000
33 G L 0.0000
34 S L -1.5263
35 N L -2.0620
36 T L -0.8775
37 Y L 0.5275
1 K M -1.5628
2 C M -0.9783
3 N M -1.3489
4 T M -1.2071
5 A M -1.4918
6 T M 0.0000
7 C M -0.8799
8 A M 0.0000
9 T M 0.0000
10 Q M -1.2104
11 R M -1.5274
12 L M 0.0000
13 A M 0.0000
14 N M -1.7818
15 F M 0.0000
16 L M 0.0000
17 V M -2.2076
18 R M -2.8441
19 S M 0.0000
20 S M 0.0000
21 N M -2.8202
22 N M -2.9333
23 L M 0.0000
24 G M 0.0000
25 P M 0.0000
26 V M 0.8450
27 L M 0.0000
28 P M 0.0000
29 P M -0.7545
30 T M 0.0000
31 N M -1.7120
32 V M 0.0000
33 G M 0.0000
34 S M -1.3625
35 N M -1.5423
36 T M -0.8258
37 Y M 0.3323
1 K N -1.3236
2 C N -0.3855
3 N N -0.7664
4 T N -0.9879
5 A N 0.0000
6 T N -1.0175
7 C N -0.7690
8 A N 0.0000
9 T N 0.0000
10 Q N -1.1810
11 R N -1.7068
12 L N 0.0000
13 A N 0.0000
14 N N -1.9948
15 F N 0.0000
16 L N 0.0000
17 V N 0.0000
18 R N -3.1906
19 S N 0.0000
20 S N 0.0000
21 N N -3.2958
22 N N -3.2000
23 L N 0.0000
24 G N -0.5384
25 P N 0.0000
26 V N 0.8065
27 L N 0.0000
28 P N -0.0029
29 P N -0.7999
30 T N 0.0000
31 N N -1.8737
32 V N 0.0000
33 G N -1.2627
34 S N -1.2324
35 N N -1.2811
36 T N -0.4283
37 Y N 0.5969
1 K O -1.4016
2 C O -0.5669
3 N O -1.1163
4 T O -1.1679
5 A O -1.4617
6 T O 0.0000
7 C O -0.6287
8 A O 0.0000
9 T O 0.0000
10 Q O -0.8994
11 R O -1.0101
12 L O 0.0000
13 A O 0.0000
14 N O -1.4122
15 F O 0.0000
16 L O 0.0000
17 V O -1.9599
18 R O -2.9989
19 S O 0.0000
20 S O 0.0000
21 N O -3.4350
22 N O -3.2259
23 L O 0.0000
24 G O 0.0000
25 P O 0.0000
26 V O 0.7556
27 L O 0.0000
28 P O 0.0000
29 P O -0.8520
30 T O -1.1513
31 N O -1.7814
32 V O 0.0000
33 G O -1.1472
34 S O -1.1906
35 N O -1.4363
36 T O -0.6724
37 Y O 0.4020
1 K P -1.1333
2 C P -0.2483
3 N P -0.5563
4 T P -0.9881
5 A P 0.0000
6 T P -0.5728
7 C P -0.4173
8 A P 0.0000
9 T P 0.0000
10 Q P -0.5802
11 R P -0.5414
12 L P 0.0000
13 A P 0.0000
14 N P -1.6663
15 F P 0.0000
16 L P 0.0000
17 V P -2.1126
18 R P -3.1924
19 S P 0.0000
20 S P 0.0000
21 N P -3.2930
22 N P -2.6951
23 L P 0.0000
24 G P 0.0000
25 P P 0.0000
26 V P 0.8112
27 L P 0.0000
28 P P 0.0667
29 P P -0.4180
30 T P -0.6242
31 N P -1.5976
32 V P 0.0000
33 G P -1.2330
34 S P -1.0942
35 N P -1.1588
36 T P -0.3698
37 Y P 0.6522
1 K Q -2.2615
2 C Q -1.2332
3 N Q -1.5769
4 T Q -0.9069
5 A Q -0.6516
6 T Q 0.0000
7 C Q -0.5567
8 A Q -0.3746
9 T Q 0.0000
10 Q Q 0.0000
11 R Q -0.7726
12 L Q -0.1824
13 A Q 0.0000
14 N Q -0.8026
15 F Q 0.0000
16 L Q 0.0000
17 V Q -1.8578
18 R Q -2.5234
19 S Q 0.0000
20 S Q 0.0000
21 N Q -3.1316
22 N Q -2.3715
23 L Q -1.4580
24 G Q -1.2507
25 P Q -0.6207
26 V Q 0.7407
27 L Q 0.0000
28 P Q 0.0000
29 P Q 0.0000
30 T Q -0.5825
31 N Q 0.0000
32 V Q 0.8776
33 G Q -0.2836
34 S Q -0.5350
35 N Q -1.2542
36 T Q -0.0446
37 Y Q 0.9105
1 K R -1.7973
2 C R -1.0645
3 N R -1.5473
4 T R -0.8313
5 A R -0.5470
6 T R -0.9615
7 C R -1.1424
8 A R -0.8929
9 T R -0.9051
10 Q R -1.7860
11 R R -2.3108
12 L R -1.1462
13 A R -1.2380
14 N R -1.7330
15 F R -1.1721
16 L R -0.8494
17 V R 0.0000
18 R R -2.5268
19 S R 0.0000
20 S R -1.7685
21 N R -2.7676
22 N R -2.9946
23 L R 0.0000
24 G R -1.8903
25 P R 0.0000
26 V R 0.0000
27 L R -0.1461
28 P R 0.0000
29 P R 0.0000
30 T R -1.4296
31 N R -1.5977
32 V R 0.3669
33 G R -0.3900
34 S R -0.4908
35 N R -0.9213
36 T R -0.1237
37 Y R 0.8006
1 K S -1.7346
2 C S -0.8371
3 N S -1.3723
4 T S -0.7204
5 A S 0.0000
6 T S -0.8890
7 C S -0.7055
8 A S -0.6937
9 T S 0.0000
10 Q S -1.2931
11 R S -2.0992
12 L S -0.9975
13 A S 0.0000
14 N S -1.7581
15 F S -0.6894
16 L S 0.0000
17 V S -1.4435
18 R S -2.2189
19 S S -0.9517
20 S S -1.0594
21 N S -2.1248
22 N S -1.6742
23 L S 0.2410
24 G S -0.0025
25 P S 0.6811
26 V S 1.7599
27 L S 1.1046
28 P S 0.3841
29 P S 0.0448
30 T S 0.0000
31 N S -0.5254
32 V S -0.3650
33 G S -0.8272
34 S S -0.7595
35 N S -1.1561
36 T S -0.2239
37 Y S 0.8833
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Laboratory of Theory of Biopolymers 2018