Project name: Scar-test

Status: done

Started: 2026-02-12 14:42:33
Settings
Chain sequence(s) A: DTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLENGGGGKYVCSNKLVLATGLRNKPLKETQGLFGAIAGFTEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAMDGVTNKVNSIIDKMNTQYEAIGCEYNNSERCMKQIEDKIEEIESKVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYSEEARLKREEISGVKLESVGTYQRRKR
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:50)
Show buried residues

Minimal score value
-4.2203
Maximal score value
2.4922
Average score
-1.1291
Total score value
-283.4084

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -2.5300
2 T A -1.4726
3 I A 0.0000
4 C A -0.2143
5 I A 0.0000
6 G A 0.0000
7 Y A -0.3334
8 H A 0.0000
9 A A 0.0000
10 N A -1.3466
11 N A -1.9456
12 S A -1.2790
13 T A -1.2687
14 D A -1.7429
15 T A -1.6448
16 V A 0.0000
17 D A -1.5246
18 T A 0.0000
19 V A 0.9616
20 L A 0.9298
21 E A -1.5738
22 K A -2.5668
23 N A -2.7007
24 V A 0.0000
25 T A -1.8079
26 V A 0.0000
27 T A 0.0000
28 H A -0.7920
29 S A -0.4242
30 V A -0.4762
31 N A -1.1481
32 L A 0.0000
33 L A -1.7095
34 E A -2.5659
35 N A -2.3370
36 G A -1.7674
37 G A 0.0000
38 G A -1.6464
39 G A -1.2537
40 K A -1.6475
41 Y A -1.0103
42 V A -0.3069
43 C A -0.0875
44 S A -0.6786
45 N A -1.5988
46 K A -1.7690
47 L A 0.0000
48 V A -0.7345
49 L A 0.0000
50 A A 0.0000
51 T A -0.1697
52 G A 0.0000
53 L A 0.0000
54 R A -1.8723
55 N A -1.8013
56 K A -2.1666
57 P A -1.8012
58 L A -1.6323
59 K A -3.0115
60 E A -3.0391
61 T A -2.2891
62 Q A -1.8808
63 G A -0.5085
64 L A 1.6804
65 F A 2.3619
66 G A 0.8810
67 A A 1.8316
68 I A 2.4922
69 A A 0.7427
70 G A -0.1513
71 F A 0.2091
72 T A -0.8356
73 E A -2.2781
74 G A 0.0000
75 G A 0.0000
76 W A 0.0000
77 Q A -1.3585
78 G A -0.6733
79 M A 0.0000
80 V A 0.6053
81 D A -1.0903
82 G A 0.0000
83 W A 0.0000
84 Y A 0.0000
85 G A 0.0000
86 Y A 0.0000
87 H A -0.0602
88 H A -0.8131
89 S A -1.7060
90 N A -2.8118
91 E A -3.3948
92 Q A -2.9407
93 G A -2.1509
94 S A -1.2517
95 G A -0.1748
96 Y A 0.4553
97 A A -0.2962
98 A A 0.0000
99 D A 0.0000
100 K A -2.9513
101 E A -3.2106
102 S A -2.3495
103 T A 0.0000
104 Q A -3.2393
105 K A -3.3625
106 A A 0.0000
107 M A -1.7692
108 D A -2.5944
109 G A -1.9943
110 V A 0.0000
111 T A -1.6911
112 N A -2.2605
113 K A -1.6794
114 V A -1.3247
115 N A -2.3153
116 S A -2.0486
117 I A 0.0000
118 I A -1.8137
119 D A -3.0348
120 K A -2.8964
121 M A -2.0213
122 N A -2.2954
123 T A -2.0438
124 Q A -1.8143
125 Y A -1.5009
126 E A -1.9213
127 A A -1.0209
128 I A -0.6215
129 G A -0.9438
130 C A -0.4054
131 E A -1.2685
132 Y A -0.5150
133 N A -1.6143
134 N A -2.4637
135 S A -2.0962
136 E A -3.0388
137 R A -2.9047
138 C A -1.1994
139 M A -1.6078
140 K A -2.7692
141 Q A -2.5706
142 I A -1.1277
143 E A -2.2844
144 D A -3.5653
145 K A -2.9713
146 I A -1.3432
147 E A -2.6452
148 E A -2.9051
149 I A -0.9209
150 E A -1.0084
151 S A -1.1711
152 K A -0.8900
153 V A 0.4579
154 W A 0.3578
155 T A 0.4302
156 Y A 1.0085
157 N A 0.2057
158 A A 0.0000
159 E A 0.0746
160 L A 0.9347
161 L A 0.7725
162 V A 0.0000
163 L A 0.2297
164 M A 0.4421
165 E A -0.7769
166 N A 0.0000
167 E A -1.6931
168 R A -2.5519
169 T A 0.0000
170 L A -1.8743
171 D A -2.7720
172 F A -1.2151
173 H A 0.0000
174 D A -1.9846
175 S A -1.4850
176 N A -1.6001
177 V A 0.0000
178 K A -2.2764
179 N A -2.8241
180 L A 0.0000
181 Y A 0.0000
182 D A -2.4104
183 K A -1.7479
184 V A 0.0000
185 R A -2.3323
186 L A -0.3881
187 Q A -1.1204
188 L A 0.0000
189 R A -2.5258
190 D A -2.3648
191 N A 0.0000
192 A A 0.0000
193 K A -3.1631
194 E A -2.4885
195 L A -0.9756
196 G A -0.9759
197 N A -0.9300
198 G A 0.0000
199 C A -0.8485
200 F A 0.0000
201 E A -2.3071
202 F A 0.0000
203 Y A -1.6939
204 H A 0.0000
205 K A -2.5843
206 C A 0.0000
207 D A -3.6959
208 N A -3.7134
209 E A -3.4202
210 C A 0.0000
211 M A 0.0000
212 E A -3.4490
213 S A -2.6286
214 V A 0.0000
215 R A -1.9419
216 N A -2.0207
217 G A -1.5193
218 T A -1.3994
219 Y A 0.0000
220 D A -2.1861
221 Y A -1.7290
222 P A -1.6238
223 Q A -2.1806
224 Y A -1.9498
225 S A -2.1001
226 E A -2.5680
227 E A -2.6963
228 A A 0.0000
229 R A -2.1090
230 L A -0.9883
231 K A -1.6786
232 R A -1.3118
233 E A -0.5952
234 E A -1.2253
235 I A 0.6980
236 S A 0.0374
237 G A -0.1925
238 V A 0.6256
239 K A -0.9579
240 L A 0.2293
241 E A -1.0240
242 S A -0.2000
243 V A 1.3447
244 G A 0.1996
245 T A 0.1680
246 Y A 0.0516
247 Q A -2.2919
248 R A -3.6700
249 R A -4.2203
250 K A -4.1701
251 R A -3.3902
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Laboratory of Theory of Biopolymers 2018