| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSSAASGFPVSSSTMTWYRQAPGKEREWVAAIWSYGWSTKYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYSNVKDYGTFWEIYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:31)
[INFO] Main: Simulation completed successfully. (00:01:31)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3945 | |
| 2 | V | A | -0.5325 | |
| 3 | Q | A | -1.0223 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.7649 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6404 | |
| 8 | G | A | -1.0163 | |
| 9 | G | A | -0.7815 | |
| 10 | G | A | -0.0010 | |
| 11 | L | A | 1.0316 | |
| 12 | V | A | 0.0155 | |
| 13 | Q | A | -1.2304 | |
| 14 | A | A | -1.4888 | |
| 15 | G | A | -1.4348 | |
| 16 | G | A | -0.9888 | |
| 17 | S | A | -1.3785 | |
| 18 | L | A | -0.9908 | |
| 19 | R | A | -2.1833 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4577 | |
| 22 | S | A | 0.0000 | |
| 23 | A | A | -0.2408 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7767 | |
| 26 | G | A | -1.0332 | |
| 27 | F | A | 0.0000 | |
| 28 | P | A | -0.9827 | |
| 29 | V | A | 0.0000 | |
| 30 | S | A | -0.3044 | |
| 31 | S | A | 0.0331 | |
| 32 | S | A | 0.0000 | |
| 33 | T | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | T | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.3089 | |
| 38 | R | A | -1.1872 | |
| 39 | Q | A | -2.0776 | |
| 40 | A | A | -2.0332 | |
| 41 | P | A | -1.4359 | |
| 42 | G | A | -1.9803 | |
| 43 | K | A | -3.3857 | |
| 44 | E | A | -3.5781 | |
| 45 | R | A | -2.7698 | |
| 46 | E | A | -1.7654 | |
| 47 | W | A | -0.5737 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | W | A | 0.5867 | |
| 53 | S | A | 0.9042 | |
| 54 | Y | A | 1.3990 | |
| 55 | G | A | 0.7459 | |
| 56 | W | A | 1.4933 | |
| 57 | S | A | 0.2528 | |
| 58 | T | A | -0.6349 | |
| 59 | K | A | -2.0160 | |
| 60 | Y | A | -1.6955 | |
| 61 | A | A | -1.6895 | |
| 62 | D | A | -2.6160 | |
| 63 | S | A | -1.7273 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.8694 | |
| 66 | G | A | -1.8742 | |
| 67 | R | A | -1.7475 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.2519 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.6438 | |
| 72 | R | A | -1.1114 | |
| 73 | D | A | -2.0048 | |
| 74 | N | A | -2.2226 | |
| 75 | A | A | -1.7538 | |
| 76 | K | A | -2.4785 | |
| 77 | N | A | -1.9557 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.0000 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.5682 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.9515 | |
| 85 | S | A | -1.4360 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.4956 | |
| 88 | P | A | -1.9592 | |
| 89 | E | A | -2.3794 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9648 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.5364 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.1622 | |
| 96 | S | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -0.7329 | |
| 100 | D | A | -0.0834 | |
| 101 | Y | A | 1.2430 | |
| 102 | G | A | 1.0250 | |
| 103 | T | A | 1.1247 | |
| 104 | F | A | 2.3768 | |
| 105 | W | A | 2.1396 | |
| 106 | E | A | 0.6799 | |
| 107 | I | A | 0.9815 | |
| 108 | Y | A | 0.7547 | |
| 109 | D | A | -0.7673 | |
| 110 | Y | A | -0.2175 | |
| 111 | W | A | 0.0830 | |
| 112 | G | A | -0.1206 | |
| 113 | Q | A | -0.8488 | |
| 114 | G | A | -0.5084 | |
| 115 | T | A | -0.7442 | |
| 116 | Q | A | -1.0244 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.2821 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7613 |