| Chain sequence(s) |
A: GGAGHVPQYFVGIGTPISFYG
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:07)
[INFO] Main: Simulation completed successfully. (00:00:07)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.7448 | |
| 2 | G | A | -0.9135 | |
| 3 | A | A | -0.5419 | |
| 4 | G | A | -0.4411 | |
| 5 | H | A | 0.1200 | |
| 6 | V | A | 2.2783 | |
| 7 | P | A | 0.0000 | |
| 8 | Q | A | 0.8435 | |
| 9 | Y | A | 2.5189 | |
| 10 | F | A | 3.5468 | |
| 11 | V | A | 3.1363 | |
| 12 | G | A | 1.8913 | |
| 13 | I | A | 2.6998 | |
| 14 | G | A | 1.5767 | |
| 15 | T | A | 2.4230 | |
| 16 | P | A | 1.8614 | |
| 17 | I | A | 2.1186 | |
| 18 | S | A | 1.6107 | |
| 19 | F | A | 2.5176 | |
| 20 | Y | A | 1.8949 | |
| 21 | G | A | 0.5819 |