Project name: query_structure

Status: done

Started: 2026-03-16 23:20:52
Settings
Chain sequence(s) A: GGAGHVPQYFVGIGTPISFYG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:07)
Show buried residues

Minimal score value
-0.9135
Maximal score value
3.5468
Average score
1.3799
Total score value
28.9784

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.7448
2 G A -0.9135
3 A A -0.5419
4 G A -0.4411
5 H A 0.1200
6 V A 2.2783
7 P A 0.0000
8 Q A 0.8435
9 Y A 2.5189
10 F A 3.5468
11 V A 3.1363
12 G A 1.8913
13 I A 2.6998
14 G A 1.5767
15 T A 2.4230
16 P A 1.8614
17 I A 2.1186
18 S A 1.6107
19 F A 2.5176
20 Y A 1.8949
21 G A 0.5819
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Laboratory of Theory of Biopolymers 2018