Project name: Busy_YtoA

Status: done

Started: 2025-12-11 09:43:45
Settings
Chain sequence(s) A: QDKCKKVAENAPVSKCQLANQCNADCKLDKHARSGECFADEKRNLQCICDACEA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:36)
Show buried residues

Minimal score value
-4.1519
Maximal score value
1.0812
Average score
-1.5327
Total score value
-82.7683

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -2.7859
2 D A -3.2227
3 K A -3.2897
4 C A -2.0374
5 K A -1.9721
6 K A -1.3230
7 V A 0.3145
8 A A -1.1839
9 E A -2.3094
10 N A -1.9874
11 A A -0.8371
12 P A -0.1331
13 V A 1.0812
14 S A 0.3083
15 K A -0.3776
16 C A -0.2773
17 Q A -0.6137
18 L A 0.0578
19 A A -1.0413
20 N A -1.8964
21 Q A -1.9629
22 C A 0.0000
23 N A -2.1033
24 A A -1.8391
25 D A -1.8187
26 C A 0.0000
27 K A -2.7455
28 L A -0.7157
29 D A -1.9921
30 K A -2.7802
31 H A -2.4689
32 A A 0.0000
33 R A -3.2857
34 S A -2.4183
35 G A -2.1644
36 E A -1.4987
37 C A 0.0900
38 F A 0.2437
39 A A -1.7802
40 D A -3.4414
41 E A -3.9958
42 K A -4.1519
43 R A -4.0066
44 N A -2.6790
45 L A -0.9973
46 Q A -0.6265
47 C A 0.0000
48 I A -0.3184
49 C A 0.0000
50 D A -2.2004
51 A A -2.3407
52 C A -1.3932
53 E A -2.2094
54 A A -1.6415
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Laboratory of Theory of Biopolymers 2018