Project name: wt protein

Status: done

Started: 2026-06-16 04:52:36
Settings
Chain sequence(s) F: ATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ
input PDB
Selected Chain(s) F
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with F chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:18)
Show buried residues

Minimal score value
-3.9599
Maximal score value
1.7822
Average score
-0.6793
Total score value
-89.6621

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
3 K F -1.4395
4 A F 0.0000
5 V F 1.2173
6 C F 0.0000
7 V F 1.3820
8 L F 0.0000
9 K F -1.5790
15 Q F -1.8842
16 G F -0.5660
17 I F 1.1732
18 I F 0.0000
19 N F 0.1063
20 F F 0.0000
21 E F -1.7776
22 Q F -2.4560
23 K F -3.2674
24 E F -3.3157
25 S F -2.1195
26 N F -2.3757
27 G F -2.0169
28 P F -1.2996
29 V F 0.0000
31 V F 0.0000
32 W F 0.7290
33 G F 0.5648
34 S F -0.2382
35 I F 0.0000
36 K F -2.5403
37 G F -1.9316
38 L F 0.0000
39 T F -2.2561
40 E F -3.2357
41 G F -1.1970
42 L F 0.1061
43 H F 0.0000
44 G F 0.0000
45 F F 0.0000
46 H F 0.0000
47 V F 0.0000
48 H F 0.0000
49 E F -0.5453
50 F F 0.3944
51 G F -0.2164
52 D F -1.2157
54 T F -0.6742
55 A F -0.4646
56 G F -0.8531
57 C F -0.3767
58 T F -0.4220
59 S F -0.5478
60 A F 0.0000
61 G F -0.3166
62 P F -0.5707
63 H F 0.0000
64 F F 0.0000
65 N F -1.0710
66 P F -0.2786
67 L F 0.3939
69 R F -2.7624
70 K F -3.1703
71 H F 0.0000
72 G F 0.0000
73 G F 0.0000
74 P F -1.4772
75 K F -2.8094
76 D F -3.1802
77 E F -3.2671
79 R F 0.0000
80 H F 0.0000
81 V F 0.0000
82 G F 0.0000
83 D F 0.0000
84 L F 0.0000
85 G F 0.0000
86 N F 0.1441
87 V F 0.0000
88 T F -0.5458
89 A F 0.0000
90 D F -3.6796
91 K F -3.9599
92 D F -3.7525
93 G F 0.0000
94 V F -2.3428
95 A F -1.3140
97 V F 0.5853
98 S F 0.4742
99 I F 0.8134
101 D F -0.3988
102 S F -0.6247
103 V F -0.2995
104 I F 0.0000
105 S F -0.5516
106 L F -0.1448
110 H F -0.6422
112 I F 0.0000
113 I F 0.8959
114 G F 0.3960
115 R F -0.1039
116 T F 0.0000
117 L F 0.0000
118 V F 0.0000
119 V F 0.0000
120 H F 0.0000
121 E F -1.8738
123 A F -0.4649
124 D F 0.0000
125 D F -1.0634
126 L F -0.7952
127 G F -1.6515
129 G F -1.3820
130 G F -1.2560
132 E F -2.5399
134 S F 0.0000
135 T F -2.5476
136 K F -3.0008
137 T F -1.9240
138 G F 0.0000
139 N F -2.3675
140 A F 0.0000
141 G F -1.5271
142 S F -1.1847
143 R F -0.7116
144 L F -0.3954
145 A F 0.0000
146 C F -0.1161
147 G F 0.3126
148 V F 1.5818
149 I F 0.0000
150 G F 1.2442
151 I F 1.7822
152 A F -0.0649
153 Q F -1.0170
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018