| Chain sequence(s) |
A: FFKGHGG
C: FFKGHGG B: FFKGHGG E: FFKGHGG D: FFKGHGG G: FFKGHGG F: FFKGHGG I: FFKGHGG H: FFKGHGG K: FFKGHGG J: FFKGHGG M: FFKGHGG L: FFKGHGG O: FFKGHGG N: FFKGHGG Q: FFKGHGG P: FFKGHGG S: FFKGHGG R: FFKGHGG T: FFKGHGG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:09:46)
[INFO] Main: Simulation completed successfully. (00:09:51)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 3.1290 | |
| 2 | F | A | 0.0000 | |
| 3 | K | A | -0.5792 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -1.2814 | |
| 6 | G | A | 0.0000 | |
| 7 | G | A | -0.3561 | |
| 1 | F | B | 2.8502 | |
| 2 | F | B | 0.0000 | |
| 3 | K | B | -0.8214 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | -1.2026 | |
| 6 | G | B | 0.0000 | |
| 7 | G | B | -0.3822 | |
| 1 | F | C | 2.3389 | |
| 2 | F | C | 0.0000 | |
| 3 | K | C | -0.7838 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | -1.1175 | |
| 6 | G | C | 0.0000 | |
| 7 | G | C | -0.3444 | |
| 1 | F | D | 2.4901 | |
| 2 | F | D | 0.0000 | |
| 3 | K | D | -0.8909 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | -1.1393 | |
| 6 | G | D | 0.0000 | |
| 7 | G | D | -0.2068 | |
| 1 | F | E | 1.9927 | |
| 2 | F | E | 0.0000 | |
| 3 | K | E | -1.1029 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -1.5091 | |
| 6 | G | E | 0.0000 | |
| 7 | G | E | -0.5091 | |
| 1 | F | F | 2.4241 | |
| 2 | F | F | 1.3624 | |
| 3 | K | F | -0.7954 | |
| 4 | G | F | -1.8849 | |
| 5 | H | F | -2.4584 | |
| 6 | G | F | -1.4174 | |
| 7 | G | F | -1.1030 | |
| 1 | F | G | 2.9597 | |
| 2 | F | G | 2.1877 | |
| 3 | K | G | -0.7173 | |
| 4 | G | G | -1.3923 | |
| 5 | H | G | -2.2726 | |
| 6 | G | G | -1.5655 | |
| 7 | G | G | -1.3014 | |
| 1 | F | H | 1.9952 | |
| 2 | F | H | 0.0000 | |
| 3 | K | H | -1.6850 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -1.6489 | |
| 6 | G | H | 0.0000 | |
| 7 | G | H | 0.0855 | |
| 1 | F | I | 2.4017 | |
| 2 | F | I | 0.0000 | |
| 3 | K | I | -0.8556 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | -1.5352 | |
| 6 | G | I | 0.0000 | |
| 7 | G | I | -0.3734 | |
| 1 | F | J | 2.0524 | |
| 2 | F | J | 0.0000 | |
| 3 | K | J | -0.7545 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -1.4756 | |
| 6 | G | J | 0.0000 | |
| 7 | G | J | -0.2973 | |
| 1 | F | K | 1.5035 | |
| 2 | F | K | 0.0000 | |
| 3 | K | K | -0.7014 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -1.3297 | |
| 6 | G | K | -0.2896 | |
| 7 | G | K | -0.3022 | |
| 1 | F | L | 1.9550 | |
| 2 | F | L | 0.0000 | |
| 3 | K | L | -0.6394 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | -1.2844 | |
| 6 | G | L | 0.0000 | |
| 7 | G | L | -0.1558 | |
| 1 | F | M | 1.5614 | |
| 2 | F | M | 0.0000 | |
| 3 | K | M | -0.8823 | |
| 4 | G | M | 0.0000 | |
| 5 | H | M | -1.4544 | |
| 6 | G | M | 0.0000 | |
| 7 | G | M | -0.1686 | |
| 1 | F | N | 1.3785 | |
| 2 | F | N | 0.0000 | |
| 3 | K | N | -1.0989 | |
| 4 | G | N | 0.0000 | |
| 5 | H | N | -2.0013 | |
| 6 | G | N | -0.5815 | |
| 7 | G | N | -0.3782 | |
| 1 | F | O | 1.5885 | |
| 2 | F | O | 0.0161 | |
| 3 | K | O | -1.5923 | |
| 4 | G | O | -2.1275 | |
| 5 | H | O | -2.1311 | |
| 6 | G | O | -0.3921 | |
| 7 | G | O | -0.1750 | |
| 1 | F | P | 3.2173 | |
| 2 | F | P | 2.3387 | |
| 3 | K | P | -1.0343 | |
| 4 | G | P | -1.9761 | |
| 5 | H | P | -2.3298 | |
| 6 | G | P | -1.3956 | |
| 7 | G | P | -0.8857 | |
| 1 | F | Q | 3.1634 | |
| 2 | F | Q | 0.0000 | |
| 3 | K | Q | -1.3925 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | -2.0187 | |
| 6 | G | Q | 0.0000 | |
| 7 | G | Q | -0.6316 | |
| 1 | F | R | 2.6236 | |
| 2 | F | R | 0.0000 | |
| 3 | K | R | -1.5126 | |
| 4 | G | R | 0.0000 | |
| 5 | H | R | -1.4446 | |
| 6 | G | R | 0.0000 | |
| 7 | G | R | -0.3575 | |
| 1 | F | S | 2.8751 | |
| 2 | F | S | 0.0000 | |
| 3 | K | S | -0.9747 | |
| 4 | G | S | 0.0000 | |
| 5 | H | S | -1.2724 | |
| 6 | G | S | 0.0000 | |
| 7 | G | S | -0.3915 | |
| 1 | F | T | 3.1555 | |
| 2 | F | T | 0.0000 | |
| 3 | K | T | -0.6622 | |
| 4 | G | T | 0.0000 | |
| 5 | H | T | -1.1457 | |
| 6 | G | T | 0.0000 | |
| 7 | G | T | -0.3459 |