Project name: pep3

Status: done

Started: 2026-02-25 03:41:21
Settings
Chain sequence(s) A: MARTKQTARKSTGGKAPRKQLATKVWTLSLSLSLSHVCLICVGYANTL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:45)
Show buried residues

Minimal score value
-3.0051
Maximal score value
3.5558
Average score
0.2674
Total score value
12.8333

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.6130
2 A A -0.5697
3 R A -2.2348
4 T A -2.0175
5 K A -2.8341
6 Q A -2.6379
7 T A -1.9274
8 A A -2.0224
9 R A -2.9342
10 K A -2.7981
11 S A -1.8619
12 T A -1.5529
13 G A -1.5661
14 G A -1.5949
15 K A -2.4168
16 A A -1.9414
17 P A -2.2932
18 R A -2.9481
19 K A -3.0051
20 Q A -1.9925
21 L A -0.0809
22 A A -0.1440
23 T A -0.3617
24 K A -0.1891
25 V A 2.1558
26 W A 2.1704
27 T A 1.4908
28 L A 2.1970
29 S A 1.9766
30 L A 1.9846
31 S A 2.0849
32 L A 2.4685
33 S A 1.9874
34 L A 2.8995
35 S A 2.0382
36 H A 1.9324
37 V A 3.4380
38 C A 3.5558
39 L A 3.5518
40 I A 3.1662
41 C A 3.1690
42 V A 3.1950
43 G A 2.2264
44 Y A 2.4860
45 A A 1.5635
46 N A 0.1708
47 T A 0.8037
48 L A 1.4327
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Laboratory of Theory of Biopolymers 2018